fms_diag_yaml_mod is an integral part of diag_manager_mod. Its function is to read the diag_table.yaml to fill in the diag_yaml_object More...

Data Types
type	diagyamlobject_type
	Object that holds the information of the diag_yaml. More...

Functions/Subroutines
subroutine	add_axis_attribute (this, att_name, att_value)
	Add an attribute to an axis. More...

subroutine	add_axis_name (this, axis_name)

subroutine	add_structured_axis_ids (this, axis_ids)

integer function	axis_length (this)
	Get the axis length of a subaxis. More...

subroutine	check_if_valid_cart_name (cart_name)
	Check if a cart_name is valid and crashes if it isn't.

subroutine	check_if_valid_direction (direction)
	Check if a direction is valid and crashes if it isn't.

subroutine	check_if_valid_domain_position (domain_position)
	Check if a domain_position is valid and crashes if it isn't.

subroutine, public	create_new_z_subaxis (zbounds, var_axis_ids, diag_axis, naxis, file_axis_id, nfile_axis, nz_subaxis)
	Creates a new z subaxis to use. More...

subroutine, public	define_diurnal_axis (diag_axis, naxis, n_diurnal_samples, is_edges)
	Defined a new diurnal axis. More...

subroutine, public	define_new_axis (diag_axis, parent_axis, naxis, parent_id, starting_index, ending_index, compute_idx, global_idx, new_axis_id, zbounds, nz_subaxis)
	Creates a new subaxis and fills it will all the information it needs. More...

subroutine, public	define_new_subaxis_index (parent_axis, subRegion, diag_axis, naxis, is_x_or_y, write_on_this_pe)
	Fill in the subaxis object for a subRegion defined by index. More...

subroutine, public	define_new_subaxis_latlon (diag_axis, axis_ids, naxis, subRegion, is_cube_sphere, write_on_this_pe)
	Fill in the subaxis object for a subRegion defined by lat lon. More...

subroutine	diag_get_value_from_key (diag_file_id, par_id, key_name, value_name, is_optional)
	diag_manager wrapper to get_value_from_key to use for allocatable string variables More...

subroutine	diag_yaml_files_obj_init (obj)
	Initializes the non string values of a diagYamlFiles_type to its default values. More...

subroutine, public	diag_yaml_object_end ()
	Destroys the diag_yaml object.

subroutine, public	diag_yaml_object_init (diag_subset_output)
	Uses the yaml_parser_mod to read in the diag_table and fill in the diag_yaml object. More...

subroutine, public	dump_diag_yaml_obj (filename)
	Prints out values from diag_yaml object for debugging. Only writes on root. More...

subroutine	fill_in_diag_fields (diag_file_id, yaml_fileobj, var_id, field, allow_averages)
	Fills in a diagYamlFilesVar_type with the contents of a variable block in diag_table.yaml. More...

subroutine	fill_in_diag_files (diag_yaml_id, diag_file_id, yaml_fileobj)
	Fills in a diagYamlFiles_type with the contents of a file block in diag_table.yaml. More...

subroutine	fill_subaxis (this, starting_index, ending_index, axis_id, parent_id, parent_axis_name, compute_idx, global_idx, zbounds, nz_subaxis)
	Fills in the information needed to define a subaxis. More...

integer function, dimension(:), allocatable, public	find_diag_field (diag_field_name, module_name)
	Determines if a diag_field is in the diag_yaml_object. More...

logical function, public	fms_diag_axis_object_end (axis_array)

logical function, public	fms_diag_axis_object_init (axis_array)

subroutine, public	fms_diag_yaml_out ()
	Writes an output yaml with all available information on the written files. Will only write with root pe. Global attributes are limited to 16 per file.

pure character(len=:) function, allocatable	get_aux (this)
	Get the auxiliary name of an axis object. More...

pure integer function, public	get_axis_id_from_name (axis_name, diag_axis, naxis, set_name)

integer function	get_axis_length (this)
	Get the length of the axis. More...

pure character(len=:) function, allocatable	get_axis_name (this, is_regional)

pure integer function, dimension(basedate_size)	get_basedate (this)
	get the basedate of a diag_yaml type More...

subroutine	get_compute_domain (this, compute_idx, need_to_define_axis, tile_number)

integer function, dimension(2)	get_compute_indices (this)
	Accesses its member compute_indices. More...

type(diagyamlfilesvar_type) function, pointer	get_diag_field_from_id (this, yaml_id)
	Get the diag_field yaml corresponding to a yaml_id. More...

integer function, dimension(:), allocatable, public	get_diag_field_ids (indices)
	Gets field indices corresponding to the indices (input argument) in the sorted variable_list. More...

pure type(diagyamlfilesvar_type) function, dimension(:), allocatable	get_diag_fields (this)
	get the diag_fields of a diag_yaml type More...

type(diagyamlfilesvar_type) function, dimension(:), allocatable, public	get_diag_fields_entries (indices)
	Gets the diag_field entries corresponding to the indices of the sorted variable_list. More...

type(diagyamlfiles_type) function, dimension(:), allocatable	get_diag_files (this)
	get the diag_files of a diag_yaml type More...

integer function, dimension(:), allocatable, public	get_diag_files_id (indices)
	Finds the indices of the diag_yamldiag_files(:) corresponding to fields in variable_list(indices) More...

pure character(len=8 *max_freq) function	get_diag_reduction_string (reduction_val)
	private function for getting reduction type string from parameter values More...

pure character(len=8 *size(unit_param)) function	get_diag_unit_string (unit_param)
	private function for getting unit string from diag_data parameter values More...

type(diagyamlobject_type) function, pointer, public	get_diag_yaml_obj ()
	gets the diag_yaml module variable More...

pure integer function	get_diurnal_axis_samples (this)

subroutine, public	get_domain_and_domain_type (diag_axis, axis_id, domain_type, domain, var_name)
	Loop through a variable's axis_id to determine and return the domain type and domain to use. More...

pure integer function	get_edges_id (this)

integer function	get_ending_index (this)
	Accesses its member ending_index. More...

pure integer function	get_file_duration (this)
	Inquiry for diag_files_objfile_duration. More...

pure integer function	get_file_duration_units (this)
	Inquiry for diag_files_objfile_duration_units. More...

pure character(len=:) function, allocatable	get_file_fname (this)
	Inquiry for diag_files_objfile_fname. More...

pure integer function	get_file_freq (this)
	Inquiry for diag_files_objfile_freq. More...

pure integer function	get_file_frequnit (this)
	Inquiry for diag_files_objfile_frequnit. More...

pure character(len=max_str_len) function, dimension(:,:), allocatable	get_file_global_meta (this)
	Inquiry for diag_files_objfile_global_meta. More...

pure integer function	get_file_new_file_freq (this)
	Inquiry for diag_files_objfile_new_file_freq. More...

pure integer function	get_file_new_file_freq_units (this)
	Inquiry for diag_files_objfile_new_file_freq_units. More...

pure character(len=:) function, allocatable	get_file_start_time (this)
	Inquiry for diag_files_objfile_start_time. More...

type(subregion_type) function, pointer	get_file_sub_region (this)
	Inquiry for diag_files_objfile_subregion. More...

pure integer function	get_file_timeunit (this)
	Inquiry for diag_files_objfile_timeunit. More...

pure character(len=:) function, allocatable	get_file_unlimdim (this)
	Inquiry for diag_files_objfile_unlimdim. More...

pure character(:) function, dimension(:), allocatable	get_file_varlist (this)
	Inquiry for diag_files_objfile_varlist. More...

pure integer function	get_filename_time (this)
	Get the integer equivalent of the time to use to determine the filename, if using a wildcard file name (i.e ocn%4yr%2mo%2dy%2hr) More...

subroutine	get_global_io_domain (this, global_io_index)
	Get the starting and ending indices of the global io domain of the axis. More...

subroutine	get_indices (this, compute_idx, corners_indices, starting_index, ending_index, need_to_define_axis)
	Determine if the subRegion is in the current PE. If it is, determine the starting and ending indices of the current PE that belong to the subRegion. More...

integer function	get_length (this, cart_axis, domain_position, global_length)
	Get the length of a 2D domain. More...

pure integer function	get_n_diurnal (this)
	Inquiry for diag_yaml_files_var_objn_diurnal. More...

integer function	get_ntiles (this)
	Get the ntiles in a domain. More...

integer function, public	get_num_unique_fields ()
	Determine the number of unique diag_fields in the diag_yaml_object. More...

pure integer function	get_parent_axis_id (this)

pure integer function	get_pow_value (this)
	Inquiry for diag_yaml_files_var_objpow_value. More...

pure character(len=:) function, allocatable	get_set_name (this)
	Get the set name of an axis object. More...

integer function	get_starting_index (this)
	Accesses its member starting_index. More...

pure integer function, dimension(2)	get_structured_axis (this)

subroutine	get_sub_region (diag_yaml_id, sub_region_id, sub_region, grid_type, fname)
	gets the lat/lon of the sub region to use in a diag_table yaml More...

pure integer function	get_subaxes_id (this)

pure character(len=:) function, allocatable	get_title (this)
	get the title of a diag_yaml type More...

integer function	get_total_num_vars (diag_yaml_id, diag_file_id)
	gets the total number of variables in the diag_table yaml file More...

pure character(len=max_str_len) function, dimension(:,:), allocatable	get_var_attributes (this)
	Inquiry for diag_yaml_files_var_objvar_attributes. More...

pure character(len=:) function, allocatable	get_var_fname (this)
	Inquiry for diag_yaml_files_var_objvar_fname. More...

pure integer function, allocatable	get_var_kind (this)
	Inquiry for diag_yaml_files_var_objvar_kind. More...

pure character(len=:) function, allocatable	get_var_longname (this)
	Inquiry for diag_yaml_files_var_objvar_longname. More...

pure character(len=:) function, allocatable	get_var_module (this)
	Inquiry for diag_yaml_files_var_objvar_module. More...

pure character(len=:) function, allocatable	get_var_outname (this)
	Inquiry for diag_yaml_files_var_objvar_outname. More...

pure integer function, allocatable	get_var_reduction (this)
	Inquiry for diag_yaml_files_var_objvar_reduction. More...

pure character(len=:) function, allocatable	get_var_units (this)
	Inquiry for diag_yaml_files_var_objvar_units. More...

pure character(len=:) function, allocatable	get_var_varname (this)
	Inquiry for diag_yaml_files_var_objvar_varname. More...

pure real(kind=r4_kind) function, dimension(2)	get_var_zbounds (this)
	Inquiry for diag_yaml_files_var_objvar_zbounds. More...

pure logical function	has_aux (this)
	Determine if an axis object has an auxiliary name. More...

pure logical function	has_diag_basedate (this)
	diag_file_objdiag_basedate is on the stack, so this is always true More...

pure logical function	has_diag_fields (this)
	Checks if diag_file_objdiag_fields is allocated. More...

pure logical function	has_diag_files (this)
	Checks if diag_file_objdiag_files is allocated. More...

pure logical function	has_diag_title (this)
	Checks if diag_file_objdiag_title is allocated. More...

pure logical function	has_file_duration (this)
	diag_file_objfile_duration is allocated on th stack, so this is always true More...

pure logical function	has_file_duration_units (this)
	diag_file_objfile_duration_units is on the stack, so this will retrun true More...

pure logical function	has_file_fname (this)
	Checks if diag_file_objfile_fname is allocated. More...

pure logical function	has_file_freq (this)
	diag_file_objfile_freq is on the stack, so the object always has it More...

pure logical function	has_file_frequnit (this)
	Checks if diag_file_objfile_frequnit is allocated. More...

pure logical function	has_file_global_meta (this)
	Checks if diag_file_objfile_global_meta is allocated. More...

pure logical function	has_file_new_file_freq (this)
	diag_file_objfile_new_file_freq is defined on the stack, so this will return true More...

pure logical function	has_file_new_file_freq_units (this)
	Checks if diag_file_objfile_new_file_freq_units is allocated. More...

pure logical function	has_file_start_time (this)
	Checks if diag_file_objfile_start_time is allocated. More...

pure logical function	has_file_sub_region (this)
	Checks if diag_file_objfile_sub_region is being used and has the sub region variables allocated. More...

pure logical function	has_file_timeunit (this)
	Checks if diag_file_objfile_timeunit is allocated. More...

pure logical function	has_file_unlimdim (this)
	Checks if diag_file_objfile_unlimdim is allocated. More...

pure logical function	has_file_varlist (this)
	Checks if diag_file_objfile_varlist is allocated. More...

pure logical function	has_file_write (this)
	Checks if diag_file_objfile_write is on the stack, so this will always be true. More...

pure logical function	has_n_diurnal (this)
	Checks if diag_file_objn_diurnal is set. More...

pure logical function	has_pow_value (this)
	Checks if diag_file_objpow_value is set. More...

pure logical function	has_set_name (this)
	Determine if an axis object has a set_name. More...

pure logical function	has_var_attributes (this)
	Checks if diag_file_objvar_attributes is allocated. More...

pure logical function	has_var_fname (this)
	Checks if diag_file_objvar_fname is allocated. More...

pure logical function	has_var_kind (this)
	Checks if diag_file_objvar_kind is allocated. More...

pure logical function	has_var_longname (this)
	Checks if diag_file_objvar_longname is allocated. More...

pure logical function	has_var_module (this)
	Checks if diag_file_objvar_module is allocated. More...

pure logical function	has_var_outname (this)
	Checks if diag_file_objvar_outname is allocated. More...

pure logical function	has_var_reduction (this)
	Checks if diag_file_objvar_reduction is allocated. More...

pure logical function	has_var_units (this)
	Checks if diag_file_objvar_units is allocated. More...

pure logical function	has_var_varname (this)
	Checks if diag_file_objvar_varname is allocated. More...

pure logical function	has_var_write (this)
	diag_file_objvar_write is on the stack, so this returns true More...

pure logical function	has_var_zbounds (this)
	Checks if diag_file_objvar_zbounds is allocated. More...

subroutine	increase_new_file_freq_index (this)
	Increate the current_new_file_freq_index by 1. More...

pure logical function	is_file_subregional (this)

logical function	is_global_meta (this)
	Inquiry for whether file_global_meta is allocated. More...

logical function, public	is_parent_axis (axis_id, parent_axis_id, diag_axis)
	Determine if the diag_axis(parent_axis_id) is the parent of diag_axis(axis_id) More...

pure logical function	is_unstructured_grid (this)

logical function	is_var_attributes (this)
	Inquiry for whether var_attributes is allocated. More...

logical function	is_x_or_y_axis (this, x_or_y)
	Determine if an axis object is an x or y axis. More...

pure logical function	is_z_axis (this)

pure character(len=120) function, dimension(2), public	parse_compress_att (compress_att)

subroutine	parse_key (filename, buffer, file_freq, file_frequnit, var)
	This parses the freq, new_file_freq, or file_duration keys which are read in as a comma list. More...

subroutine	register_diag_axis_obj (this, axis_name, axis_data, units, cart_name, long_name, direction, set_name, Domain, Domain2, DomainU, aux, req, tile_count, domain_position, axis_length)
	Initialize the axis. More...

subroutine	set_axis_domain (this, Domain, Domain2, DomainU)
	Set the axis domain. More...

subroutine	set_axis_id (this, axis_id)
	Set the axis_id. More...

subroutine	set_edges (this, edges_name, edges_id)
	Set the name and ids of the edges. More...

subroutine	set_field_kind (field, skind)
	This checks if the kind of a diag field is valid and sets it. More...

subroutine	set_field_reduction (field, reduction_method)
	This checks if the reduction of a diag field is valid and sets it If the reduction method is diurnalXX or powXX, it gets the number of diurnal sample and the power value. More...

subroutine	set_file_time_units (yaml_fileobj, file_timeunit)
	This checks if the time unit in a diag file is valid and sets the integer equivalent. More...

subroutine	set_filename_time (yaml_fileobj, filename_time)
	This checks if the filename_time in a diag file is correct and sets the integer equivalent. More...

integer function	set_valid_time_units (time_units, error_msg)
	This checks if a time unit is valid and if it is, it assigns the integer equivalent. More...

pure integer function	size_diag_files (this)
	Find the number of files listed in the diag yaml. More...

integer pure function	size_file_varlist (this)
	Finds the number of variables in the file_varlist. More...

subroutine	write_axis_data (this, fms2io_fileobj, parent_axis)
	Write the axis data to an open fms2io_fileobj. More...

subroutine	write_axis_metadata (this, fms2io_fileobj, edges_in_file, parent_axis)
	Write the axis meta data to an open fileobj. More...

subroutine	write_diurnal_metadata (this, fms2io_fileobj)

Detailed Description

fms_diag_yaml_mod is an integral part of diag_manager_mod. Its function is to read the diag_table.yaml to fill in the diag_yaml_object

Data Type Documentation

◆ fms_diag_yaml_mod::diagyamlobject_type

type fms_diag_yaml_mod::diagyamlobject_type

Object that holds the information of the diag_yaml.

Definition at line 249 of file fms_diag_yaml.F90.

Collaboration diagram for diagyamlobject_type:

[legend]

Public Attributes
type(diagyamlfilesvar_type), dimension(:), allocatable, public	diag_fields
	Diag fields info.

type(diagyamlfiles_type), dimension(:), allocatable, public	diag_files
	History file info.

Private Member Functions
procedure	get_basedate
	Returns the basedate array.

procedure	get_diag_field_from_id

procedure	get_diag_fields
	Returns the diag_field array.

procedure	get_diag_files
	Returns the diag_files array.

procedure	get_title
	Returns the title.

procedure	has_diag_basedate

procedure	has_diag_fields

procedure	has_diag_files

procedure	has_diag_title

procedure	size_diag_files

Private Attributes
integer, dimension(basedate_size), private	diag_basedate
	basedate array

character(len=:), allocatable, private	diag_title
	Experiment name.

Function/Subroutine Documentation

◆ add_axis_attribute()

subroutine fms_diag_axis_object_mod::add_axis_attribute	(	class(fmsdiagfullaxis_type), intent(inout)	this,
		character(len=*), intent(in)	att_name,
		class(*), dimension(:), intent(in)	att_value
	)

private

Add an attribute to an axis.

Parameters

[in,out]	this	diag_axis obj
[in]	att_name	Name of the attribute
[in]	att_value	The attribute value to add

Definition at line 293 of file fms_diag_axis_object.F90.

◆ add_structured_axis_ids()

subroutine fms_diag_axis_object_mod::add_structured_axis_ids	(	class(fmsdiagaxis_type), intent(inout), target	this,
		integer, dimension(2), intent(in)	axis_ids
	)

private

Parameters

[in,out]	this	diag_axis obj
[in]	axis_ids	axis ids to add to the axis object

Definition at line 544 of file fms_diag_axis_object.F90.

◆ axis_length()

integer function fms_diag_axis_object_mod::axis_length ( class(fmsdiagsubaxis_type), intent(in) this )

private

Get the axis length of a subaxis.

Returns: the axis length

Parameters

[in] this diag_sub_axis obj

Definition at line 873 of file fms_diag_axis_object.F90.

◆ create_new_z_subaxis()

subroutine, public fms_diag_axis_object_mod::create_new_z_subaxis	(	real(kind=r4_kind), dimension(2), intent(in)	zbounds,
		integer, dimension(:), intent(inout)	var_axis_ids,
		class(fmsdiagaxiscontainer_type), dimension(:), intent(inout), target	diag_axis,
		integer, intent(inout)	naxis,
		integer, dimension(:), intent(inout)	file_axis_id,
		integer, intent(inout)	nfile_axis,
		integer, intent(inout)	nz_subaxis
	)

Creates a new z subaxis to use.

Parameters

[in]	zbounds	Bounds of the Z axis
[in,out]	var_axis_ids	The variable's axis_ids
[in,out]	diag_axis	Array of diag_axis objects
[in,out]	naxis	Number of axis that have been registered
[in,out]	file_axis_id	The file's axis_ids
[in,out]	nfile_axis	Number of axis that have been defined in file
[in,out]	nz_subaxis	The number of z subaxis currently defined in the file

Definition at line 1405 of file fms_diag_axis_object.F90.

◆ define_diurnal_axis()

subroutine, public fms_diag_axis_object_mod::define_diurnal_axis	(	class(fmsdiagaxiscontainer_type), dimension(:), intent(inout), target	diag_axis,
		integer, intent(inout)	naxis,
		integer, intent(in)	n_diurnal_samples,
		logical, intent(in)	is_edges
	)

Defined a new diurnal axis.

Parameters

[in,out]	diag_axis	Array of axis containers
[in,out]	naxis	Number of axis that have been defined
[in]	n_diurnal_samples	The number of diurnal samples for the curent axis
[in]	is_edges	Flag indicating if this is an edge axis

Definition at line 470 of file fms_diag_axis_object.F90.

◆ define_new_axis()

subroutine, public fms_diag_axis_object_mod::define_new_axis	(	class(fmsdiagaxiscontainer_type), dimension(:), intent(inout), target	diag_axis,
		class(fmsdiagfullaxis_type), intent(inout)	parent_axis,
		integer, intent(inout)	naxis,
		integer, intent(in)	parent_id,
		integer, intent(in)	starting_index,
		integer, intent(in)	ending_index,
		integer, dimension(2), intent(in)	compute_idx,
		integer, dimension(2), intent(in), optional	global_idx,
		integer, intent(out), optional	new_axis_id,
		real(kind=r4_kind), dimension(2), intent(in), optional	zbounds,
		integer, intent(in), optional	nz_subaxis
	)

Creates a new subaxis and fills it will all the information it needs.

Parameters

[in,out]	diag_axis	Diag_axis object
[in,out]	parent_axis	The parent axis
[in,out]	naxis	The number of axis that have been defined
[in]	parent_id	Id of the parent axis
[in]	starting_index	PE's Starting index
[in]	ending_index	PE's Ending index
[in]	compute_idx	Starting and ending index of the axis's compute domain
[in]	global_idx	Starting and ending index of the axis's global domain
[out]	new_axis_id	Axis id of the axis this is creating
[in]	zbounds	Bounds of the Z axis
[in]	nz_subaxis	The number of z subaxis that have been defined in the file
[in]	nz_subaxis	This is the axis id of the new axis!
[in]	nz_subaxis	Add the axis_id of the new subaxis to the parent axis
[in]	nz_subaxis	Allocate the new axis as a subaxis and fill it

Definition at line 1259 of file fms_diag_axis_object.F90.

◆ define_new_subaxis_index()

subroutine, public fms_diag_axis_object_mod::define_new_subaxis_index	(	type(fmsdiagfullaxis_type), intent(inout)	parent_axis,
		type(subregion_type), intent(in)	subRegion,
		class(fmsdiagaxiscontainer_type), dimension(:), intent(inout), target	diag_axis,
		integer, intent(inout)	naxis,
		integer, intent(in)	is_x_or_y,
		logical, intent(out)	write_on_this_pe
	)

Fill in the subaxis object for a subRegion defined by index.

Parameters

[in,out]	diag_axis	Diag_axis object
[in,out]	parent_axis	axis object of the parent
[in,out]	naxis	Number of axis registered
[in]	subregion	SubRegion definition from the yaml
[in]	is_x_or_y	Flag indicating if it is a x or y axis
[out]	write_on_this_pe	.true. if the subregion is on this PE

Definition at line 1091 of file fms_diag_axis_object.F90.

◆ define_new_subaxis_latlon()

subroutine, public fms_diag_axis_object_mod::define_new_subaxis_latlon	(	class(fmsdiagaxiscontainer_type), dimension(:), intent(inout), target	diag_axis,
		integer, dimension(:), intent(in)	axis_ids,
		integer, intent(inout)	naxis,
		type(subregion_type), intent(in)	subRegion,
		logical, intent(in)	is_cube_sphere,
		logical, intent(out)	write_on_this_pe
	)

Fill in the subaxis object for a subRegion defined by lat lon.

Parameters

[in,out]	diag_axis	Diag_axis object
[in]	axis_ids	Array of axes_ids
[in,out]	naxis	Number of axis registered
[in]	subregion	SubRegion definition from the yaml
[in]	is_cube_sphere	.true. if this is a cubesphere
[out]	write_on_this_pe	.true. if the subregion is on this PE

Definition at line 1128 of file fms_diag_axis_object.F90.

◆ diag_get_value_from_key()

subroutine fms_diag_yaml_mod::diag_get_value_from_key	(	integer, intent(in)	diag_file_id,
		integer, intent(in)	par_id,
		character(len=*), intent(in)	key_name,
		character(len=:), allocatable	value_name,
		logical, intent(in), optional	is_optional
	)

private

diag_manager wrapper to get_value_from_key to use for allocatable string variables

Parameters

[in]	diag_file_id	Id of the file block in the yaml file
[in]	par_id	Id of the parent block in the yaml file
[in]	key_name	Key to look for in the parent block
	value_name	Value of the key
[in]	is_optional	Flag indicating if the key is optional

Definition at line 716 of file fms_diag_yaml.F90.

◆ diag_yaml_files_obj_init()

subroutine fms_diag_yaml_mod::diag_yaml_files_obj_init ( type(diagyamlfiles_type), intent(out) obj )

private

Initializes the non string values of a diagYamlFiles_type to its default values.

Parameters

[out] obj diagYamlFiles_type object to initialize

Definition at line 1246 of file fms_diag_yaml.F90.

◆ diag_yaml_object_init()

subroutine, public fms_diag_yaml_mod::diag_yaml_object_init ( integer, intent(in) diag_subset_output )

Uses the yaml_parser_mod to read in the diag_table and fill in the diag_yaml object.

Parameters

[in] diag_subset_output DIAG_ALL - Current PE is in the one and only pelist DIAG_OTHER - Current PE is not in the ocean pelist and there are multiple pelists DIAG_OCEAN - Current PE is in the ocean pelist and there are multiple pelists

Loop through the number of nfiles and fill in the diag_yaml obj

Save the file name in the file_list

Save the filename in the diag_field type

initialize axes string

Save the variable name in the diag_file type

Save the variable name and the module name in the variable_list

Sort the file list in alphabetical order

Definition at line 359 of file fms_diag_yaml.F90.

◆ dump_diag_yaml_obj()

subroutine, public fms_diag_yaml_mod::dump_diag_yaml_obj ( character(len=*), intent(in), optional filename )

Prints out values from diag_yaml object for debugging. Only writes on root.

Parameters

[in] filename optional name of logfile to write to, otherwise prints to stdout

Definition at line 1558 of file fms_diag_yaml.F90.

◆ fill_in_diag_fields()

subroutine fms_diag_yaml_mod::fill_in_diag_fields	(	integer, intent(in)	diag_file_id,
		type(diagyamlfiles_type), intent(in)	yaml_fileobj,
		integer, intent(in)	var_id,
		type(diagyamlfilesvar_type), intent(inout)	field,
		logical, intent(in)	allow_averages
	)

private

Fills in a diagYamlFilesVar_type with the contents of a variable block in diag_table.yaml.

Parameters

[in]	diag_file_id	Id of the file block in the yaml file
[in]	yaml_fileobj	The yaml file obj for the variables
[in]	var_id	Id of the variable block in the yaml file
[in,out]	field	diagYamlFilesVar_type obj to read the contents into
[in]	allow_averages	.True. if averages are allowed for this file

Set the zbounds if they exist

Definition at line 627 of file fms_diag_yaml.F90.

◆ fill_in_diag_files()

subroutine fms_diag_yaml_mod::fill_in_diag_files	(	integer, intent(in)	diag_yaml_id,
		integer, intent(in)	diag_file_id,
		type(diagyamlfiles_type), intent(inout)	yaml_fileobj
	)

private

Fills in a diagYamlFiles_type with the contents of a file block in diag_table.yaml.

Parameters

[in]	diag_yaml_id	Id of the diag_table.yaml
[in]	diag_file_id	Id of the file block to read
[in,out]	yaml_fileobj	diagYamlFiles_type obj to read the contents into

Definition at line 541 of file fms_diag_yaml.F90.

◆ fill_subaxis()

subroutine fms_diag_axis_object_mod::fill_subaxis	(	class(fmsdiagsubaxis_type), intent(inout)	this,
		integer, intent(in)	starting_index,
		integer, intent(in)	ending_index,
		integer, intent(in)	axis_id,
		integer, intent(in)	parent_id,
		character(len=*), intent(in)	parent_axis_name,
		integer, dimension(2), intent(in)	compute_idx,
		integer, dimension(2), intent(in), optional	global_idx,
		real(kind=r4_kind), dimension(2), intent(in), optional	zbounds,
		integer, intent(in), optional	nz_subaxis
	)

private

Fills in the information needed to define a subaxis.

Parameters

[in,out]	this	diag_sub_axis obj
[in]	starting_index	Starting index of the subRegion for the PE
[in]	ending_index	Ending index of the subRegion for the PE
[in]	axis_id	Axis id to assign to the subaxis
[in]	parent_id	The id of the parent axis the subaxis belongs to
[in]	parent_axis_name	Name of the parent_axis
[in]	compute_idx	Starting and ending index of the axis's compute domain
[in]	global_idx	Starting and ending index of the axis's compute domain
[in]	zbounds	Bounds of the z-axis
[in]	nz_subaxis	The number of z subaxis that have been defined in the file

Definition at line 828 of file fms_diag_axis_object.F90.

◆ find_diag_field()

integer function, dimension(:), allocatable, public fms_diag_yaml_mod::find_diag_field	(	character(len=*), intent(in)	diag_field_name,
		character(len=*), intent(in)	module_name
	)

Determines if a diag_field is in the diag_yaml_object.

Returns: Indices of the locations where the field was found

Parameters

[in]	diag_field_name	diag_field name to search for
[in]	module_name	Name of the module, the variable is in

Definition at line 1470 of file fms_diag_yaml.F90.

◆ fms_diag_axis_object_end()

logical function, public fms_diag_axis_object_mod::fms_diag_axis_object_end ( class(fmsdiagaxiscontainer_type), dimension(:), intent(inout), allocatable axis_array )

Parameters

[in,out] axis_array Array of diag_axis

Definition at line 973 of file fms_diag_axis_object.F90.

◆ fms_diag_axis_object_init()

logical function, public fms_diag_axis_object_mod::fms_diag_axis_object_init ( class(fmsdiagaxiscontainer_type), dimension(:), intent(inout), allocatable axis_array )

Parameters

[in,out] axis_array Array of diag_axis

Definition at line 961 of file fms_diag_axis_object.F90.

◆ get_aux()

pure character(len=:) function, allocatable fms_diag_axis_object_mod::get_aux ( class(fmsdiagfullaxis_type), intent(in) this )

private

Get the auxiliary name of an axis object.

Returns: the auxiliary name of an axis object

Parameters

[in] this diag_axis obj

Definition at line 680 of file fms_diag_axis_object.F90.

◆ get_axis_id_from_name()

pure integer function, public fms_diag_axis_object_mod::get_axis_id_from_name	(	character(len=*), intent(in)	axis_name,
		class(fmsdiagaxiscontainer_type), dimension(:), intent(in)	diag_axis,
		integer, intent(in)	naxis,
		character(len=*), intent(in)	set_name
	)

Parameters

[in]	diag_axis	Array of axis object
[in]	axis_name	Name of the axis
[in]	naxis	Number of axis that have been registered
[in]	set_name	Name of the axis set

Definition at line 1352 of file fms_diag_axis_object.F90.

◆ get_axis_length()

integer function fms_diag_axis_object_mod::get_axis_length ( class(fmsdiagfullaxis_type), intent(in) this )

private

Get the length of the axis.

Returns: axis length

Parameters

[in] this diag_axis obj

Returns: If the axis is domain decomposed axis_length will be set to the length for the current PE:

Definition at line 609 of file fms_diag_axis_object.F90.

◆ get_axis_name()

pure character(len=:) function, allocatable fms_diag_axis_object_mod::get_axis_name	(	class(fmsdiagaxis_type), intent(in)	this,
		logical, intent(in), optional	is_regional
	)

private

Parameters

[in]	this	Axis object
[in]	is_regional	Flag indicating if the axis is regional

Definition at line 986 of file fms_diag_axis_object.F90.

◆ get_basedate()

pure integer function, dimension (basedate_size) fms_diag_yaml_mod::get_basedate ( class (diagyamlobject_type), intent(in) this )

private

get the basedate of a diag_yaml type

Returns: the basedate as an integer array

Parameters

[in] this The diag_yaml

Returns: Basedate array result to return

Definition at line 292 of file fms_diag_yaml.F90.

◆ get_compute_domain()

subroutine fms_diag_axis_object_mod::get_compute_domain	(	class(fmsdiagfullaxis_type), intent(in)	this,
		integer, dimension(:), intent(inout)	compute_idx,
		logical, intent(out)	need_to_define_axis,
		integer, intent(in), optional	tile_number
	)

private

Parameters

[in]	this	diag_axis obj
[in,out]	compute_idx	Compute domain of the axis
[out]	need_to_define_axis	.true. if it needed to define the axis
[in]	tile_number	The tile number of the axis
[in]	tile_number	Initialize the output
[in]	tile_number	If the axis is not domain decomposed, use the whole axis as the compute domain
[in]	tile_number	If the the tile number is present and the current PE is not on the tile, then there is no need to define the axis
[in]	tile_number	Get the compute domain for the current PE if it is an "X" or "Y" axis

Definition at line 780 of file fms_diag_axis_object.F90.

◆ get_compute_indices()

integer function, dimension(2) fms_diag_axis_object_mod::get_compute_indices ( class(fmsdiagsubaxis_type), intent(in) this )

private

Accesses its member compute_indices.

Returns: a copy of the ending_index

Parameters

[in] this diag_sub_axis object

Returns: Result to return

Definition at line 899 of file fms_diag_axis_object.F90.

◆ get_diag_field_from_id()

type(diagyamlfilesvar_type) function, pointer fms_diag_yaml_mod::get_diag_field_from_id	(	class (diagyamlobject_type), intent(in), target	this,
		integer, intent(in)	yaml_id
	)

private

Get the diag_field yaml corresponding to a yaml_id.

Returns: Pointer to the diag_field yaml entry

Parameters

[in]	this	The diag_yaml
[in]	yaml_id	Yaml id

Returns: Diag fields info

Definition at line 333 of file fms_diag_yaml.F90.

◆ get_diag_field_ids()

integer function, dimension(:), allocatable, public fms_diag_yaml_mod::get_diag_field_ids ( integer, dimension(:), intent(in) indices )

Gets field indices corresponding to the indices (input argument) in the sorted variable_list.

Returns: Copy of array of field indices

Parameters

[in] indices Indices of the fields in the sorted variable_list array

Definition at line 1504 of file fms_diag_yaml.F90.

◆ get_diag_fields()

pure type(diagyamlfilesvar_type) function, dimension (:), allocatable fms_diag_yaml_mod::get_diag_fields ( class (diagyamlobject_type), intent(in) this )

private

get the diag_fields of a diag_yaml type

Returns: the diag_fields

Parameters

[in] this The diag_yaml

Returns: Diag fields info

Definition at line 349 of file fms_diag_yaml.F90.

◆ get_diag_fields_entries()

type(diagyamlfilesvar_type) function, dimension (:), allocatable, public fms_diag_yaml_mod::get_diag_fields_entries ( integer, dimension(:), intent(in) indices )

Gets the diag_field entries corresponding to the indices of the sorted variable_list.

Returns: Array of diag_fields

Parameters

[in] indices Indices of the field in the sorted variable_list array

Definition at line 1484 of file fms_diag_yaml.F90.

◆ get_diag_files()

type(diagyamlfiles_type) function, dimension (:), allocatable fms_diag_yaml_mod::get_diag_files ( class (diagyamlobject_type), intent(in) this )

private

get the diag_files of a diag_yaml type

Returns: the diag_files

Parameters

[in] this The diag_yaml

Returns: History file info

Definition at line 323 of file fms_diag_yaml.F90.

◆ get_diag_files_id()

integer function, dimension(:), allocatable, public fms_diag_yaml_mod::get_diag_files_id ( integer, dimension(:), intent(in) indices )

Finds the indices of the diag_yamldiag_files(:) corresponding to fields in variable_list(indices)

Returns: indices of the diag_yamldiag_files(:)

Parameters

[in] indices Indices of the field in the sorted variable_list

Definition at line 1520 of file fms_diag_yaml.F90.

◆ get_diag_reduction_string()

pure character(len=8 * max_freq) function fms_diag_yaml_mod::get_diag_reduction_string ( integer, dimension(:), intent(in) reduction_val )

private

private function for getting reduction type string from parameter values

Parameters

[in] reduction_val reduction types (eg. time_average)

Definition at line 1991 of file fms_diag_yaml.F90.

◆ get_diag_unit_string()

pure character(len=8 * size(unit_param)) function fms_diag_yaml_mod::get_diag_unit_string ( integer, dimension(:), intent(in) unit_param )

private

private function for getting unit string from diag_data parameter values

Parameters

[in] unit_param diag unit parameter values from diag_data_mod.
eg. DIAG_SECONDS, DIAG_MINUTES,DIAG_HOURS, DIAG_DAYS, DIAG_YEARS

Definition at line 1961 of file fms_diag_yaml.F90.

◆ get_diag_yaml_obj()

type (diagyamlobject_type) function, pointer, public fms_diag_yaml_mod::get_diag_yaml_obj

gets the diag_yaml module variable

Returns: a copy of the diag_yaml module variable

Definition at line 283 of file fms_diag_yaml.F90.

◆ get_diurnal_axis_samples()

pure integer function fms_diag_axis_object_mod::get_diurnal_axis_samples ( class(fmsdiagdiurnalaxis_type), intent(in) this )

private

Parameters

[in] this Axis Object

Definition at line 1379 of file fms_diag_axis_object.F90.

◆ get_domain_and_domain_type()

subroutine, public fms_diag_axis_object_mod::get_domain_and_domain_type	(	class(fmsdiagaxiscontainer_type), dimension(:), intent(in), target	diag_axis,
		integer, dimension(:), intent(in)	axis_id,
		integer, intent(out)	domain_type,
		class(diagdomain_t), intent(out), pointer	domain,
		character(len=*), intent(in)	var_name
	)

Loop through a variable's axis_id to determine and return the domain type and domain to use.

Parameters

[in]	diag_axis	Array of diag_axis
[in]	axis_id	Array of axis ids
[out]	domain_type	fileobj_type to use
[in]	var_name	Name of the variable (for error messages)

Definition at line 1054 of file fms_diag_axis_object.F90.

◆ get_edges_id()

pure integer function fms_diag_axis_object_mod::get_edges_id ( class(fmsdiagaxis_type), intent(in) this )

private

Parameters

[in] this diag_axis obj

Definition at line 572 of file fms_diag_axis_object.F90.

◆ get_ending_index()

integer function fms_diag_axis_object_mod::get_ending_index ( class(fmsdiagsubaxis_type), intent(in) this )

private

Accesses its member ending_index.

Returns: a copy of the ending_index

Parameters

[in] this diag_sub_axis object

Returns: Result to return

Definition at line 891 of file fms_diag_axis_object.F90.

◆ get_file_duration()

pure integer function fms_diag_yaml_mod::get_file_duration ( class (diagyamlfiles_type), intent(in) this )

private

Inquiry for diag_files_objfile_duration.

Returns: file_duration of a diag_yaml_file_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1070 of file fms_diag_yaml.F90.

◆ get_file_duration_units()

pure integer function fms_diag_yaml_mod::get_file_duration_units ( class (diagyamlfiles_type), intent(in) this )

private

Inquiry for diag_files_objfile_duration_units.

Returns: file_duration_units of a diag_yaml_file_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1078 of file fms_diag_yaml.F90.

◆ get_file_fname()

pure character (len=:) function, allocatable fms_diag_yaml_mod::get_file_fname ( class (diagyamlfiles_type), intent(in) this )

private

Inquiry for diag_files_objfile_fname.

Returns: file_fname of a diag_yaml_file obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 998 of file fms_diag_yaml.F90.

◆ get_file_freq()

pure integer function fms_diag_yaml_mod::get_file_freq ( class (diagyamlfiles_type), intent(in) this )

private

Inquiry for diag_files_objfile_freq.

Returns: file_freq of a diag_yaml_file_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1014 of file fms_diag_yaml.F90.

◆ get_file_frequnit()

pure integer function fms_diag_yaml_mod::get_file_frequnit ( class (diagyamlfiles_type), intent(in) this )

private

Inquiry for diag_files_objfile_frequnit.

Returns: file_frequnit of a diag_yaml_file_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1006 of file fms_diag_yaml.F90.

◆ get_file_global_meta()

pure character (len=max_str_len) function, dimension(:,:), allocatable fms_diag_yaml_mod::get_file_global_meta ( class (diagyamlfiles_type), intent(in) this )

private

Inquiry for diag_files_objfile_global_meta.

Returns: file_global_meta of a diag_yaml_file_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1094 of file fms_diag_yaml.F90.

◆ get_file_new_file_freq()

pure integer function fms_diag_yaml_mod::get_file_new_file_freq ( class (diagyamlfiles_type), intent(in) this )

private

Inquiry for diag_files_objfile_new_file_freq.

Returns: file_new_file_freq of a diag_yaml_file_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1046 of file fms_diag_yaml.F90.

◆ get_file_new_file_freq_units()

pure integer function fms_diag_yaml_mod::get_file_new_file_freq_units ( class (diagyamlfiles_type), intent(in) this )

private

Inquiry for diag_files_objfile_new_file_freq_units.

Returns: file_new_file_freq_units of a diag_yaml_file_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1054 of file fms_diag_yaml.F90.

◆ get_file_start_time()

pure character (len=:) function, allocatable fms_diag_yaml_mod::get_file_start_time ( class (diagyamlfiles_type), intent(in) this )

private

Inquiry for diag_files_objfile_start_time.

Returns: file_start_time of a diag_yaml_file_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1062 of file fms_diag_yaml.F90.

◆ get_file_sub_region()

type(subregion_type) function, pointer fms_diag_yaml_mod::get_file_sub_region ( class (diagyamlfiles_type), intent(in), target this )

private

Inquiry for diag_files_objfile_subregion.

Returns: file_sub_region of a diag_yaml_file_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1038 of file fms_diag_yaml.F90.

◆ get_file_timeunit()

pure integer function fms_diag_yaml_mod::get_file_timeunit ( class (diagyamlfiles_type), intent(in) this )

private

Inquiry for diag_files_objfile_timeunit.

Returns: file_timeunit of a diag_yaml_file_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1022 of file fms_diag_yaml.F90.

◆ get_file_unlimdim()

pure character (len=:) function, allocatable fms_diag_yaml_mod::get_file_unlimdim ( class (diagyamlfiles_type), intent(in) this )

private

Inquiry for diag_files_objfile_unlimdim.

Returns: file_unlimdim of a diag_yaml_file_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1030 of file fms_diag_yaml.F90.

◆ get_file_varlist()

pure character (:) function, dimension(:), allocatable fms_diag_yaml_mod::get_file_varlist ( class (diagyamlfiles_type), intent(in) this )

private

Inquiry for diag_files_objfile_varlist.

Returns: file_varlist of a diag_yaml_file_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1086 of file fms_diag_yaml.F90.

◆ get_filename_time()

pure integer function fms_diag_yaml_mod::get_filename_time ( class (diagyamlfiles_type), intent(in) this )

private

Get the integer equivalent of the time to use to determine the filename, if using a wildcard file name (i.e ocn%4yr%2mo%2dy%2hr)

Returns: the integer equivalent of the time to use to determine the filename

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1103 of file fms_diag_yaml.F90.

◆ get_global_io_domain()

subroutine fms_diag_axis_object_mod::get_global_io_domain	(	class(fmsdiagfullaxis_type), intent(in)	this,
		integer, dimension(2), intent(out)	global_io_index
	)

private

Get the starting and ending indices of the global io domain of the axis.

Parameters

[in]	this	diag_axis obj
[out]	global_io_index	Global io domain starting and ending index

Definition at line 583 of file fms_diag_axis_object.F90.

◆ get_indices()

subroutine fms_diag_axis_object_mod::get_indices	(	class(fmsdiagfullaxis_type), intent(in)	this,
		integer, dimension(:), intent(in)	compute_idx,
		class(*), dimension(:), intent(in)	corners_indices,
		integer, intent(out)	starting_index,
		integer, intent(out)	ending_index,
		logical, intent(out)	need_to_define_axis
	)

private

Determine if the subRegion is in the current PE. If it is, determine the starting and ending indices of the current PE that belong to the subRegion.

Parameters

[in]	this	diag_axis obj
[in]	compute_idx	Current PE's compute domain
[in]	corners_indices	The indices of the corners of the subRegion
[out]	starting_index	Starting index of the subRegion for the current PE
[out]	ending_index	Ending index of the subRegion for the current PE
[out]	need_to_define_axis	.true. if it is needed to define an axis

Definition at line 713 of file fms_diag_axis_object.F90.

◆ get_length()

integer function fms_diag_axis_object_mod::get_length	(	class(diagdomain_t), intent(in)	this,
		character(len=*), intent(in)	cart_axis,
		integer, intent(in)	domain_position,
		integer, intent(in)	global_length
	)

private

Get the length of a 2D domain.

Returns: Length of the 2D domain

Parameters

[in]	this	diag_axis obj
[in]	cart_axis	cart_axis of the axis
[in]	domain_position	Domain position (CENTER, NORTH, EAST)
[in]	global_length	global_length of the axis

Returns: If domain is 1D or UG, just set it to the global length

Definition at line 921 of file fms_diag_axis_object.F90.

◆ get_n_diurnal()

pure integer function fms_diag_yaml_mod::get_n_diurnal ( class (diagyamlfilesvar_type), intent(in) this )

private

Inquiry for diag_yaml_files_var_objn_diurnal.

Returns: the number of diurnal samples of a diag_yaml_files_var_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1219 of file fms_diag_yaml.F90.

◆ get_ntiles()

integer function fms_diag_axis_object_mod::get_ntiles ( class(diagdomain_t), intent(in) this )

private

Get the ntiles in a domain.

Returns: the number of tiles in a domain

Parameters

[in] this diag_axis obj

Definition at line 907 of file fms_diag_axis_object.F90.

◆ get_num_unique_fields()

integer function, public fms_diag_yaml_mod::get_num_unique_fields

Determine the number of unique diag_fields in the diag_yaml_object.

Returns: The number of unique diag_fields

Definition at line 1461 of file fms_diag_yaml.F90.

◆ get_parent_axis_id()

pure integer function fms_diag_axis_object_mod::get_parent_axis_id ( class(fmsdiagaxis_type), intent(in) this )

private

Parameters

[in] this Axis Object

Definition at line 1299 of file fms_diag_axis_object.F90.

◆ get_pow_value()

pure integer function fms_diag_yaml_mod::get_pow_value ( class (diagyamlfilesvar_type), intent(in) this )

private

Inquiry for diag_yaml_files_var_objpow_value.

Returns: the pow_value of a diag_yaml_files_var_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1227 of file fms_diag_yaml.F90.

◆ get_set_name()

pure character(len=:) function, allocatable fms_diag_axis_object_mod::get_set_name ( class(fmsdiagfullaxis_type), intent(in) this )

private

Get the set name of an axis object.

Returns: the set name of an axis object

Parameters

[in] this diag_axis obj

Definition at line 670 of file fms_diag_axis_object.F90.

◆ get_starting_index()

integer function fms_diag_axis_object_mod::get_starting_index ( class(fmsdiagsubaxis_type), intent(in) this )

private

Accesses its member starting_index.

Returns: a copy of the starting_index

Parameters

[in] this diag_sub_axis object

Returns: Result to return

Definition at line 883 of file fms_diag_axis_object.F90.

◆ get_structured_axis()

pure integer function, dimension(2) fms_diag_axis_object_mod::get_structured_axis ( class(fmsdiagaxis_type), intent(in), target this )

private

Parameters

[in] this diag_axis obj

Definition at line 557 of file fms_diag_axis_object.F90.

◆ get_sub_region()

subroutine fms_diag_yaml_mod::get_sub_region	(	integer, intent(in)	diag_yaml_id,
		integer, intent(in)	sub_region_id,
		type(subregion_type), intent(inout)	sub_region,
		character(len=*), intent(in)	grid_type,
		character(len=*), intent(in)	fname
	)

private

gets the lat/lon of the sub region to use in a diag_table yaml

Parameters

[in]	diag_yaml_id	Id of the diag_table yaml file
[in]	sub_region_id	Id of the region block to read from
[in,out]	sub_region	Type that stores the sub_region
[in]	grid_type	The grid_type as it is read from the file
[in]	fname	filename of the subregion (for error messages)

Definition at line 733 of file fms_diag_yaml.F90.

◆ get_subaxes_id()

pure integer function fms_diag_axis_object_mod::get_subaxes_id ( class(fmsdiagaxis_type), intent(in) this )

private

Parameters

[in] this Axis Object

Definition at line 1318 of file fms_diag_axis_object.F90.

◆ get_title()

pure character(len=:) function, allocatable fms_diag_yaml_mod::get_title ( class (diagyamlobject_type), intent(in) this )

private

get the title of a diag_yaml type

Returns: the title of the diag table as an allocated string

Parameters

[in] this The diag_yaml

Returns: Basedate array result to return

Definition at line 313 of file fms_diag_yaml.F90.

◆ get_total_num_vars()

integer function fms_diag_yaml_mod::get_total_num_vars	(	integer, intent(in)	diag_yaml_id,
		integer, intent(in)	diag_file_id
	)

private

gets the total number of variables in the diag_table yaml file

Returns: total number of variables

Parameters

[in]	diag_yaml_id	Id for the diag_table yaml
[in]	diag_file_id	Id of the file in the diag_table yaml

Definition at line 767 of file fms_diag_yaml.F90.

◆ get_var_attributes()

pure character (len=max_str_len) function, dimension (:,:), allocatable fms_diag_yaml_mod::get_var_attributes ( class (diagyamlfilesvar_type), intent(in) this )

private

Inquiry for diag_yaml_files_var_objvar_attributes.

Returns: var_attributes of a diag_yaml_files_var_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1211 of file fms_diag_yaml.F90.

◆ get_var_fname()

pure character (len=:) function, allocatable fms_diag_yaml_mod::get_var_fname ( class (diagyamlfilesvar_type), intent(in) this )

private

Inquiry for diag_yaml_files_var_objvar_fname.

Returns: var_fname of a diag_yaml_files_var_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1134 of file fms_diag_yaml.F90.

◆ get_var_kind()

pure integer function, allocatable fms_diag_yaml_mod::get_var_kind ( class (diagyamlfilesvar_type), intent(in) this )

private

Inquiry for diag_yaml_files_var_objvar_kind.

Returns: var_kind of a diag_yaml_files_var_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1166 of file fms_diag_yaml.F90.

◆ get_var_longname()

pure character (len=:) function, allocatable fms_diag_yaml_mod::get_var_longname ( class (diagyamlfilesvar_type), intent(in) this )

private

Inquiry for diag_yaml_files_var_objvar_longname.

Returns: var_longname of a diag_yaml_files_var_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1187 of file fms_diag_yaml.F90.

◆ get_var_module()

pure character (len=:) function, allocatable fms_diag_yaml_mod::get_var_module ( class (diagyamlfilesvar_type), intent(in) this )

private

Inquiry for diag_yaml_files_var_objvar_module.

Returns: var_module of a diag_yaml_files_var_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1158 of file fms_diag_yaml.F90.

◆ get_var_outname()

pure character (len=:) function, allocatable fms_diag_yaml_mod::get_var_outname ( class (diagyamlfilesvar_type), intent(in) this )

private

Inquiry for diag_yaml_files_var_objvar_outname.

Returns: var_outname of a diag_yaml_files_var_obj

Parameters

[in] this The object being inquiried

Returns: What is returned; If outname is not set, the variable name will be used

Definition at line 1174 of file fms_diag_yaml.F90.

◆ get_var_reduction()

pure integer function, allocatable fms_diag_yaml_mod::get_var_reduction ( class (diagyamlfilesvar_type), intent(in) this )

private

Inquiry for diag_yaml_files_var_objvar_reduction.

Returns: var_reduction of a diag_yaml_files_var_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1150 of file fms_diag_yaml.F90.

◆ get_var_units()

pure character (len=:) function, allocatable fms_diag_yaml_mod::get_var_units ( class (diagyamlfilesvar_type), intent(in) this )

private

Inquiry for diag_yaml_files_var_objvar_units.

Returns: var_units of a diag_yaml_files_var_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1195 of file fms_diag_yaml.F90.

◆ get_var_varname()

pure character (len=:) function, allocatable fms_diag_yaml_mod::get_var_varname ( class (diagyamlfilesvar_type), intent(in) this )

private

Inquiry for diag_yaml_files_var_objvar_varname.

Returns: var_varname of a diag_yaml_files_var_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1142 of file fms_diag_yaml.F90.

◆ get_var_zbounds()

pure real(kind=r4_kind) function, dimension(2) fms_diag_yaml_mod::get_var_zbounds ( class (diagyamlfilesvar_type), intent(in) this )

private

Inquiry for diag_yaml_files_var_objvar_zbounds.

Returns: var_zbounds of a diag_yaml_files_var_obj

Parameters

[in] this The object being inquiried

Returns: What is returned

Definition at line 1203 of file fms_diag_yaml.F90.

◆ has_aux()

pure logical function fms_diag_axis_object_mod::has_aux ( class(fmsdiagfullaxis_type), intent(in) this )

private

Determine if an axis object has an auxiliary name.

Returns: .true. if an axis object has an auxiliary name

Parameters

[in] this diag_axis obj

Definition at line 626 of file fms_diag_axis_object.F90.

◆ has_diag_basedate()

pure logical function fms_diag_yaml_mod::has_diag_basedate ( class(diagyamlobject_type), intent(in) this )

private

diag_file_objdiag_basedate is on the stack, so this is always true

Returns: true

Parameters

[in] this diagYamlObject_type object to initialize

Definition at line 1442 of file fms_diag_yaml.F90.

◆ has_diag_fields()

pure logical function fms_diag_yaml_mod::has_diag_fields ( class(diagyamlobject_type), intent(in) this )

private

Checks if diag_file_objdiag_fields is allocated.

Returns: true if diag_file_objdiag_fields is allocated

Parameters

[in] this diagYamlObject_type object to initialize

Definition at line 1454 of file fms_diag_yaml.F90.

◆ has_diag_files()

pure logical function fms_diag_yaml_mod::has_diag_files ( class(diagyamlobject_type), intent(in) this )

private

Checks if diag_file_objdiag_files is allocated.

Returns: true if diag_file_objdiag_files is allocated

Parameters

[in] this diagYamlObject_type object to initialize

Definition at line 1448 of file fms_diag_yaml.F90.

◆ has_diag_title()

pure logical function fms_diag_yaml_mod::has_diag_title ( class(diagyamlobject_type), intent(in) this )

private

Checks if diag_file_objdiag_title is allocated.

Returns: true if diag_file_objdiag_title is allocated

Parameters

[in] this diagYamlObject_type object to inquire

Definition at line 1436 of file fms_diag_yaml.F90.

◆ has_file_duration()

pure logical function fms_diag_yaml_mod::has_file_duration ( class(diagyamlfiles_type), intent(in) this )

private

diag_file_objfile_duration is allocated on th stack, so this is always true

Returns: true

Parameters

[in] this diagYamlFiles_type object to initialize

Definition at line 1324 of file fms_diag_yaml.F90.

◆ has_file_duration_units()

pure logical function fms_diag_yaml_mod::has_file_duration_units ( class(diagyamlfiles_type), intent(in) this )

private

diag_file_objfile_duration_units is on the stack, so this will retrun true

Returns: true

Parameters

[in] this diagYamlFiles_type object to initialize

Definition at line 1330 of file fms_diag_yaml.F90.

◆ has_file_fname()

pure logical function fms_diag_yaml_mod::has_file_fname ( class(diagyamlfiles_type), intent(in) this )

private

Checks if diag_file_objfile_fname is allocated.

Returns: true if diag_file_objfile_fname is allocated

Parameters

[in] this diagYamlFiles_type object to initialize

Definition at line 1260 of file fms_diag_yaml.F90.

◆ has_file_freq()

pure logical function fms_diag_yaml_mod::has_file_freq ( class(diagyamlfiles_type), intent(in) this )

private

diag_file_objfile_freq is on the stack, so the object always has it

Returns: true if diag_file_objfile_freq is allocated

Parameters

[in] this diagYamlFiles_type object to initialize

Definition at line 1272 of file fms_diag_yaml.F90.

◆ has_file_frequnit()

pure logical function fms_diag_yaml_mod::has_file_frequnit ( class(diagyamlfiles_type), intent(in) this )

private

Checks if diag_file_objfile_frequnit is allocated.

Returns: true if diag_file_objfile_frequnit is allocated

Parameters

[in] this diagYamlFiles_type object to initialize

Definition at line 1266 of file fms_diag_yaml.F90.

◆ has_file_global_meta()

pure logical function fms_diag_yaml_mod::has_file_global_meta ( class(diagyamlfiles_type), intent(in) this )

private

Checks if diag_file_objfile_global_meta is allocated.

Returns: true if diag_file_objfile_global_meta is allocated

Parameters

[in] this diagYamlFiles_type object to initialize

Definition at line 1342 of file fms_diag_yaml.F90.

◆ has_file_new_file_freq()

pure logical function fms_diag_yaml_mod::has_file_new_file_freq ( class(diagyamlfiles_type), intent(in) this )

private

diag_file_objfile_new_file_freq is defined on the stack, so this will return true

Returns: true

Parameters

[in] this diagYamlFiles_type object to initialize

Definition at line 1306 of file fms_diag_yaml.F90.

◆ has_file_new_file_freq_units()

pure logical function fms_diag_yaml_mod::has_file_new_file_freq_units ( class(diagyamlfiles_type), intent(in) this )

private

Checks if diag_file_objfile_new_file_freq_units is allocated.

Returns: true if diag_file_objfile_new_file_freq_units is allocated

Parameters

[in] this diagYamlFiles_type object to initialize

Definition at line 1312 of file fms_diag_yaml.F90.

◆ has_file_start_time()

pure logical function fms_diag_yaml_mod::has_file_start_time ( class(diagyamlfiles_type), intent(in) this )

private

Checks if diag_file_objfile_start_time is allocated.

Returns: true if diag_file_objfile_start_time is allocated

Parameters

[in] this diagYamlFiles_type object to initialize

Definition at line 1318 of file fms_diag_yaml.F90.

◆ has_file_sub_region()

pure logical function fms_diag_yaml_mod::has_file_sub_region ( class(diagyamlfiles_type), intent(in) this )

private

Checks if diag_file_objfile_sub_region is being used and has the sub region variables allocated.

Returns: true if diag_file_objfile_sub_region sub region variables are allocated

Parameters

[in] this diagYamlFiles_type object to initialize

Definition at line 1296 of file fms_diag_yaml.F90.

◆ has_file_timeunit()

pure logical function fms_diag_yaml_mod::has_file_timeunit ( class(diagyamlfiles_type), intent(in) this )

private

Checks if diag_file_objfile_timeunit is allocated.

Returns: true if diag_file_objfile_timeunit is allocated

Parameters

[in] this diagYamlFiles_type object to initialize

Definition at line 1278 of file fms_diag_yaml.F90.

◆ has_file_unlimdim()

pure logical function fms_diag_yaml_mod::has_file_unlimdim ( class(diagyamlfiles_type), intent(in) this )

private

Checks if diag_file_objfile_unlimdim is allocated.

Returns: true if diag_file_objfile_unlimdim is allocated

Parameters

[in] this diagYamlFiles_type object to initialize

Definition at line 1284 of file fms_diag_yaml.F90.

◆ has_file_varlist()

pure logical function fms_diag_yaml_mod::has_file_varlist ( class(diagyamlfiles_type), intent(in) this )

private

Checks if diag_file_objfile_varlist is allocated.

Returns: true if diag_file_objfile_varlist is allocated

Parameters

[in] this diagYamlFiles_type object to initialize

Definition at line 1336 of file fms_diag_yaml.F90.

◆ has_file_write()

pure logical function fms_diag_yaml_mod::has_file_write ( class(diagyamlfiles_type), intent(in) this )

private

Checks if diag_file_objfile_write is on the stack, so this will always be true.

Returns: true

Parameters

[in] this diagYamlFiles_type object to initialize

Definition at line 1290 of file fms_diag_yaml.F90.

◆ has_n_diurnal()

pure logical function fms_diag_yaml_mod::has_n_diurnal ( class(diagyamlfilesvar_type), intent(in) this )

private

Checks if diag_file_objn_diurnal is set.

Returns: true if diag_file_objn_diurnal is set

Parameters

[in] this diagYamlvar_type object to inquire

Definition at line 1423 of file fms_diag_yaml.F90.

◆ has_pow_value()

pure logical function fms_diag_yaml_mod::has_pow_value ( class(diagyamlfilesvar_type), intent(in) this )

private

Checks if diag_file_objpow_value is set.

Returns: true if diag_file_objpow_value is set

Parameters

[in] this diagYamlvar_type object to inquire

Definition at line 1429 of file fms_diag_yaml.F90.

◆ has_set_name()

pure logical function fms_diag_axis_object_mod::has_set_name ( class(fmsdiagfullaxis_type), intent(in) this )

private

Determine if an axis object has a set_name.

Returns: .true. if an axis object has a set_name

Parameters

[in] this diag_axis obj

Definition at line 637 of file fms_diag_axis_object.F90.

◆ has_var_attributes()

pure logical function fms_diag_yaml_mod::has_var_attributes ( class(diagyamlfilesvar_type), intent(in) this )

private

Checks if diag_file_objvar_attributes is allocated.

Returns: true if diag_file_objvar_attributes is allocated

Parameters

[in] this diagYamlvar_type object to initialize

Definition at line 1417 of file fms_diag_yaml.F90.

◆ has_var_fname()

pure logical function fms_diag_yaml_mod::has_var_fname ( class(diagyamlfilesvar_type), intent(in) this )

private

Checks if diag_file_objvar_fname is allocated.

Returns: true if diag_file_objvar_fname is allocated

Parameters

[in] this diagYamlvar_type object to initialize

Definition at line 1349 of file fms_diag_yaml.F90.

◆ has_var_kind()

pure logical function fms_diag_yaml_mod::has_var_kind ( class(diagyamlfilesvar_type), intent(in) this )

private

Checks if diag_file_objvar_kind is allocated.

Returns: true if diag_file_objvar_kind is allocated

Parameters

[in] this diagYamlvar_type object to initialize

Definition at line 1373 of file fms_diag_yaml.F90.

◆ has_var_longname()

pure logical function fms_diag_yaml_mod::has_var_longname ( class(diagyamlfilesvar_type), intent(in) this )

private

Checks if diag_file_objvar_longname is allocated.

Returns: true if diag_file_objvar_longname is allocated

Parameters

[in] this diagYamlvar_type object to initialize

Definition at line 1399 of file fms_diag_yaml.F90.

◆ has_var_module()

pure logical function fms_diag_yaml_mod::has_var_module ( class(diagyamlfilesvar_type), intent(in) this )

private

Checks if diag_file_objvar_module is allocated.

Returns: true if diag_file_objvar_module is allocated

Parameters

[in] this diagYamlvar_type object to initialize

Definition at line 1367 of file fms_diag_yaml.F90.

◆ has_var_outname()

pure logical function fms_diag_yaml_mod::has_var_outname ( class(diagyamlfilesvar_type), intent(in) this )

private

Checks if diag_file_objvar_outname is allocated.

Returns: true if diag_file_objvar_outname is allocated

Parameters

[in] this diagYamlvar_type object to initialize

Definition at line 1385 of file fms_diag_yaml.F90.

◆ has_var_reduction()

pure logical function fms_diag_yaml_mod::has_var_reduction ( class(diagyamlfilesvar_type), intent(in) this )

private

Checks if diag_file_objvar_reduction is allocated.

Returns: true if diag_file_objvar_reduction is allocated

Parameters

[in] this diagYamlvar_type object to initialize

Definition at line 1361 of file fms_diag_yaml.F90.

◆ has_var_units()

pure logical function fms_diag_yaml_mod::has_var_units ( class(diagyamlfilesvar_type), intent(in) this )

private

Checks if diag_file_objvar_units is allocated.

Returns: true if diag_file_objvar_units is allocated

Parameters

[in] this diagYamlvar_type object to initialize

Definition at line 1405 of file fms_diag_yaml.F90.

◆ has_var_varname()

pure logical function fms_diag_yaml_mod::has_var_varname ( class(diagyamlfilesvar_type), intent(in) this )

private

Checks if diag_file_objvar_varname is allocated.

Returns: true if diag_file_objvar_varname is allocated

Parameters

[in] this diagYamlvar_type object to initialize

Definition at line 1355 of file fms_diag_yaml.F90.

◆ has_var_write()

pure logical function fms_diag_yaml_mod::has_var_write ( class(diagyamlfilesvar_type), intent(in) this )

private

diag_file_objvar_write is on the stack, so this returns true

Returns: true

Parameters

[in] this diagYamlvar_type object to initialize

Definition at line 1379 of file fms_diag_yaml.F90.

◆ has_var_zbounds()

pure logical function fms_diag_yaml_mod::has_var_zbounds ( class(diagyamlfilesvar_type), intent(in) this )

private

Checks if diag_file_objvar_zbounds is allocated.

Returns: true if diag_file_objvar_zbounds is allocated

Parameters

[in] this diagYamlvar_type object to initialize

Definition at line 1411 of file fms_diag_yaml.F90.

◆ increase_new_file_freq_index()

subroutine fms_diag_yaml_mod::increase_new_file_freq_index ( class(diagyamlfiles_type), intent(inout) this )

private

Increate the current_new_file_freq_index by 1.

Parameters

[in,out] this The file object

Definition at line 1121 of file fms_diag_yaml.F90.

◆ is_global_meta()

logical function fms_diag_yaml_mod::is_global_meta ( class (diagyamlfiles_type), intent(in) this )

private

Inquiry for whether file_global_meta is allocated.

Returns: Flag indicating if file_global_meta is allocated

Parameters

[in] this The object being inquiried

Definition at line 1111 of file fms_diag_yaml.F90.

◆ is_parent_axis()

logical function, public fms_diag_axis_object_mod::is_parent_axis	(	integer, intent(in)	axis_id,
		integer, intent(in)	parent_axis_id,
		class(fmsdiagaxiscontainer_type), dimension(:), intent(in), target	diag_axis
	)

Determine if the diag_axis(parent_axis_id) is the parent of diag_axis(axis_id)

Returns: .True. if diag_axis(parent_axis_id) is the parent of diag_axis(axis_id)

Parameters

[in]	axis_id	Axis id to check
[in]	parent_axis_id	Axis id of the parent to check
[in]	diag_axis	Array of diag_axis objects

Definition at line 1473 of file fms_diag_axis_object.F90.

◆ is_unstructured_grid()

pure logical function fms_diag_axis_object_mod::is_unstructured_grid ( class(fmsdiagaxis_type), intent(in), target this )

private

Parameters

[in] this diag_axis obj

Definition at line 533 of file fms_diag_axis_object.F90.

◆ is_var_attributes()

logical function fms_diag_yaml_mod::is_var_attributes ( class (diagyamlfilesvar_type), intent(in) this )

private

Inquiry for whether var_attributes is allocated.

Returns: Flag indicating if var_attributes is allocated

Parameters

[in] this The object being inquiried

Definition at line 1235 of file fms_diag_yaml.F90.

◆ is_x_or_y_axis()

logical function fms_diag_axis_object_mod::is_x_or_y_axis	(	class(fmsdiagfullaxis_type), intent(in)	this,
		integer, intent(inout), optional	x_or_y
	)

private

Determine if an axis object is an x or y axis.

Returns: .true. if an axis object is an x or y axis, optionally return a flag indicating which it is

Parameters

[in]	this	diag_axis obj
[in,out]	x_or_y	returns is_x_axis if it is a x axis is_y_axis if it is a y axis

Definition at line 648 of file fms_diag_axis_object.F90.

◆ is_z_axis()

pure logical function fms_diag_axis_object_mod::is_z_axis ( class(fmsdiagaxis_type), intent(in) this )

private

Parameters

[in] this Axis object

Definition at line 1008 of file fms_diag_axis_object.F90.

◆ parse_compress_att()

pure character(len=120) function, dimension(2), public fms_diag_axis_object_mod::parse_compress_att ( class(*), dimension(:), intent(in) compress_att )

Parameters

[in] compress_att The compress attribute to parse

Definition at line 1334 of file fms_diag_axis_object.F90.

◆ parse_key()

subroutine fms_diag_yaml_mod::parse_key	(	character(len=*), intent(in)	filename,
		character(len=*), intent(inout)	buffer,
		integer, dimension(:), intent(out)	file_freq,
		integer, dimension(:), intent(out)	file_frequnit,
		character(len=*), intent(in)	var
	)

private

This parses the freq, new_file_freq, or file_duration keys which are read in as a comma list.

Parameters

[in]	filename	The name of the file (for error messages)
[in,out]	buffer	Buffer that was read in from the yaml
[out]	file_freq	buffer to store the freq, new_file_freq, or file_duration after it is parsed
[out]	file_frequnit	buffer to store the freq units, new_file_freq units, or file_duration units after it is parsed
[in]	var	Name of the key parsing

Definition at line 793 of file fms_diag_yaml.F90.

◆ register_diag_axis_obj()

subroutine fms_diag_axis_object_mod::register_diag_axis_obj	(	class(fmsdiagfullaxis_type), intent(inout)	this,
		character(len=*), intent(in)	axis_name,
		class(*), dimension(:), intent(in)	axis_data,
		character(len=*), intent(in)	units,
		character(len=1), intent(in)	cart_name,
		character(len=*), intent(in), optional	long_name,
		integer, intent(in), optional	direction,
		character(len=*), intent(in), optional	set_name,
		type(domain1d), intent(in), optional	Domain,
		type(domain2d), intent(in), optional	Domain2,
		type(domainug), intent(in), optional	DomainU,
		character(len=*), intent(in), optional	aux,
		character(len=*), intent(in), optional	req,
		integer, intent(in), optional	tile_count,
		integer, intent(in), optional	domain_position,
		integer, intent(in), optional	axis_length
	)

private

Initialize the axis.

Parameters

[in,out]	this	Diag_axis obj
[in]	axis_name	Name of the axis
[in]	axis_data	Array of coordinate values
[in]	units	Units for the axis
[in]	cart_name	Cartesian axis ("X", "Y", "Z", "T", "U", "N")
[in]	long_name	Long name for the axis.
[in]	set_name	Name of the parent axis, if it is a subaxis
[in]	direction	Indicates the direction of the axis
[in]	domain	1D domain
[in]	domain2	2D domain
[in]	domainu	Unstructured domain
[in]	aux	Auxiliary name, can only be `geolon_t` or `geolat_t`
[in]	req	Required field names.
[in]	tile_count	Number of tiles
[in]	domain_position	Domain position, "NORTH" or "EAST"
[in]	axis_length	The length of the axis size(axis_data(:))
[in]	axis_length	This is what fms2_io expects in the register_field call
[in]	axis_length	This is what fms2_io expects in the register_field call

Definition at line 204 of file fms_diag_axis_object.F90.

◆ set_axis_domain()

subroutine fms_diag_axis_object_mod::set_axis_domain	(	class(diagdomain_t)	this,
		type(domain1d), intent(in), optional	Domain,
		type(domain2d), intent(in), optional	Domain2,
		type(domainug), intent(in), optional	DomainU
	)

private

Set the axis domain.

Parameters

	this	fms_domain obj
[in]	domain	1d domain
[in]	domain2	2d domain
[in]	domainu	Unstructured domain

Definition at line 943 of file fms_diag_axis_object.F90.

◆ set_axis_id()

subroutine fms_diag_axis_object_mod::set_axis_id	(	class(fmsdiagfullaxis_type), intent(inout)	this,
		integer, intent(in)	axis_id
	)

private

Set the axis_id.

Parameters

[in,out] this diag_axis obj

Definition at line 689 of file fms_diag_axis_object.F90.

◆ set_edges()

subroutine fms_diag_axis_object_mod::set_edges	(	class(fmsdiagfullaxis_type), intent(inout)	this,
		character(len=*), intent(in)	edges_name,
		integer, intent(in)	edges_id
	)

private

Set the name and ids of the edges.

Parameters

[in,out]	this	diag_axis obj
[in]	edges_name	Name of the edges
[in]	edges_id	Axis id of the edges
[in]	edges_id	Saving the name and the id of the edges axis because it will make it easier to use downstream (i.e you need the edges name to write the attribute to the current axis, and you need the edges id to add to the diag file object so that you can write the edges to the file)

Definition at line 698 of file fms_diag_axis_object.F90.

◆ set_field_kind()

subroutine fms_diag_yaml_mod::set_field_kind	(	type(diagyamlfilesvar_type), intent(inout)	field,
		character(len=*), intent(in)	skind
	)

private

This checks if the kind of a diag field is valid and sets it.

Parameters

[in,out]	field	diagYamlFilesVar_type obj to read the contents into
[in]	skind	The variable kind as read from diag_yaml

Definition at line 883 of file fms_diag_yaml.F90.

◆ set_field_reduction()

subroutine fms_diag_yaml_mod::set_field_reduction	(	type(diagyamlfilesvar_type), intent(inout)	field,
		character(len=*), intent(in)	reduction_method
	)

private

This checks if the reduction of a diag field is valid and sets it If the reduction method is diurnalXX or powXX, it gets the number of diurnal sample and the power value.

Parameters

[in,out]	field	diagYamlFilesVar_type obj to read the contents into
[in]	reduction_method	reduction method as read from the yaml

Definition at line 906 of file fms_diag_yaml.F90.

◆ set_file_time_units()

subroutine fms_diag_yaml_mod::set_file_time_units	(	type(diagyamlfiles_type), intent(inout)	yaml_fileobj,
		character(len=*), intent(in)	file_timeunit
	)

private

This checks if the time unit in a diag file is valid and sets the integer equivalent.

Parameters

[in,out]	yaml_fileobj	diagYamlFiles_type obj to checK
[in]	file_timeunit	file_timeunit as it is read from the diag_table

Definition at line 854 of file fms_diag_yaml.F90.

◆ set_filename_time()

subroutine fms_diag_yaml_mod::set_filename_time	(	type(diagyamlfiles_type), intent(inout)	yaml_fileobj,
		character(len=*), intent(in)	filename_time
	)

private

This checks if the filename_time in a diag file is correct and sets the integer equivalent.

Parameters

[in,out]	yaml_fileobj	diagYamlFiles_type obj to check
[in]	filename_time	filename_time as it is read from the yaml
[in]	filename_time	This is the default

Definition at line 862 of file fms_diag_yaml.F90.

◆ set_valid_time_units()

integer function fms_diag_yaml_mod::set_valid_time_units	(	character(len=*), intent(in)	time_units,
		character(len=*), intent(in)	error_msg
	)

private

This checks if a time unit is valid and if it is, it assigns the integer equivalent.

Returns: The integer equivalent to the time units

Parameters

[in]	time_units	The time_units as a string
[in]	error_msg	Error message to append

Returns: The integer equivalent of the time_units

Definition at line 960 of file fms_diag_yaml.F90.

◆ size_diag_files()

pure integer function fms_diag_yaml_mod::size_diag_files ( class (diagyamlobject_type), intent(in) this )

private

Find the number of files listed in the diag yaml.

Returns: the number of files in the diag yaml

Parameters

[in] this The diag_yaml

Definition at line 302 of file fms_diag_yaml.F90.

◆ size_file_varlist()

integer pure function fms_diag_yaml_mod::size_file_varlist ( class (diagyamlfiles_type), intent(in) this )

private

Finds the number of variables in the file_varlist.

Returns: the size of the diag_files_objfile_varlist array

Parameters

[in] this The object being inquiried

Definition at line 991 of file fms_diag_yaml.F90.

◆ write_axis_data()

subroutine fms_diag_axis_object_mod::write_axis_data	(	class(fmsdiagaxis_type), intent(in), target	this,
		class(fmsnetcdffile_t), intent(inout)	fms2io_fileobj,
		class(fmsdiagaxis_type), intent(in), optional, target	parent_axis
	)

private

Write the axis data to an open fms2io_fileobj.

Parameters

[in]	this	diag_axis obj
[in,out]	fms2io_fileobj	Fms2_io fileobj to write the data to
[in]	parent_axis	The parent axis if this is a subaxis

Definition at line 441 of file fms_diag_axis_object.F90.

◆ write_axis_metadata()

subroutine fms_diag_axis_object_mod::write_axis_metadata	(	class(fmsdiagaxis_type), intent(in), target	this,
		class(fmsnetcdffile_t), intent(inout)	fms2io_fileobj,
		logical, intent(in)	edges_in_file,
		class(fmsdiagaxis_type), intent(in), optional, target	parent_axis
	)

private

Write the axis meta data to an open fileobj.

Parameters

[in]	this	diag_axis obj
[in,out]	fms2io_fileobj	Fms2_io fileobj to write the data to
[in]	edges_in_file	.True. if the edges to this axis are already in the file
[in]	parent_axis	If the axis is a subaxis, axis object for the parent axis (this will be used to get some of the metadata info)

Definition at line 310 of file fms_diag_axis_object.F90.

◆ write_diurnal_metadata()

subroutine fms_diag_axis_object_mod::write_diurnal_metadata	(	class(fmsdiagdiurnalaxis_type), intent(in)	this,
		class(fmsnetcdffile_t), intent(inout)	fms2io_fileobj
	)

private

Parameters

[in]	this	Diurnal axis Object
[in,out]	fms2io_fileobj	Fms2_io fileobj to write the data to

Definition at line 1389 of file fms_diag_axis_object.F90.

Data Types

Functions/Subroutines

Detailed Description

Data Type Documentation

◆ fms_diag_yaml_mod::diagyamlobject_type

Public Attributes

Private Member Functions

Private Attributes

Function/Subroutine Documentation

◆ add_axis_attribute()

◆ add_structured_axis_ids()

◆ axis_length()

◆ create_new_z_subaxis()

◆ define_diurnal_axis()

◆ define_new_axis()

◆ define_new_subaxis_index()

◆ define_new_subaxis_latlon()

◆ diag_get_value_from_key()

◆ diag_yaml_files_obj_init()

◆ diag_yaml_object_init()

◆ dump_diag_yaml_obj()

◆ fill_in_diag_fields()

◆ fill_in_diag_files()

◆ fill_subaxis()

◆ find_diag_field()

◆ fms_diag_axis_object_end()

◆ fms_diag_axis_object_init()

◆ get_aux()

◆ get_axis_id_from_name()

◆ get_axis_length()

◆ get_axis_name()

◆ get_basedate()

◆ get_compute_domain()

◆ get_compute_indices()

◆ get_diag_field_from_id()

◆ get_diag_field_ids()

◆ get_diag_fields()

◆ get_diag_fields_entries()

◆ get_diag_files()

◆ get_diag_files_id()

◆ get_diag_reduction_string()

◆ get_diag_unit_string()

◆ get_diag_yaml_obj()

◆ get_diurnal_axis_samples()

◆ get_domain_and_domain_type()

◆ get_edges_id()

◆ get_ending_index()

◆ get_file_duration()

◆ get_file_duration_units()

◆ get_file_fname()

◆ get_file_freq()

◆ get_file_frequnit()

◆ get_file_global_meta()

◆ get_file_new_file_freq()

◆ get_file_new_file_freq_units()

◆ get_file_start_time()

◆ get_file_sub_region()

◆ get_file_timeunit()

◆ get_file_unlimdim()

◆ get_file_varlist()

◆ get_filename_time()

◆ get_global_io_domain()

◆ get_indices()

◆ get_length()

◆ get_n_diurnal()

◆ get_ntiles()

◆ get_num_unique_fields()

◆ get_parent_axis_id()

◆ get_pow_value()

◆ get_set_name()

◆ get_starting_index()

◆ get_structured_axis()

◆ get_sub_region()

◆ get_subaxes_id()

◆ get_title()

◆ get_total_num_vars()

◆ get_var_attributes()

◆ get_var_fname()

◆ get_var_kind()

◆ get_var_longname()