Index

A

avg_type (fre.app.generate_time_averages.timeAverager.timeAverager attribute)

C

cdoTimeAverager (class in fre.app.generate_time_averages.cdoTimeAverager) check_dataset_for_ocean_grid() (in module fre.cmor.cmor_mixer) check_interp_method() (in module fre.app.regrid_xy.regrid_xy) check_per_component_settings() (in module fre.app.regrid_xy.regrid_xy) checkout_create() (in module fre.make.createCheckout) chunk_from_legacy() (in module fre.pp.configure_script_xml) clean_yaml() (fre.yamltools.combine_yamls.init_compile_yaml method) (fre.yamltools.combine_yamls.init_pp_yaml method) cmor_run_subtool() (in module fre.cmor.cmor_mixer) cmorize_target_var_files() (in module fre.cmor.cmor_mixer)

combine_analysis() (fre.yamltools.combine_yamls.init_pp_yaml method) combine_compile() (fre.yamltools.combine_yamls.init_compile_yaml method) combine_experiment() (fre.yamltools.combine_yamls.init_pp_yaml method) combine_model() (fre.yamltools.combine_yamls.init_compile_yaml method) (fre.yamltools.combine_yamls.init_pp_yaml method) combine_platforms() (fre.yamltools.combine_yamls.init_compile_yaml method) combined_compile_existcheck() (in module fre.yamltools.combine_yamls) compile_create() (in module fre.make.createCompile) consolidate_yamls() (in module fre.yamltools.combine_yamls) copy_nc() (in module fre.cmor.cmor_mixer) create_tmp_dir() (in module fre.cmor.cmor_mixer)

D

dockerfile_create() (in module fre.make.createDocker)

duration_to_seconds() (in module fre.pp.configure_script_xml)

E

experiment_check() (in module fre.yamltools.combine_yamls)

F

fre module fre.app module fre.app.freapp module fre.app.generate_time_averages module fre.app.generate_time_averages.cdoTimeAverager module fre.app.generate_time_averages.frenctoolsTimeAverager module fre.app.generate_time_averages.frepytoolsTimeAverager module fre.app.generate_time_averages.generate_time_averages module fre.app.generate_time_averages.tests module fre.app.generate_time_averages.tests.test_generate_time_averages module fre.app.generate_time_averages.timeAverager module fre.app.mask_atmos_plevel module fre.app.regrid_xy module fre.app.regrid_xy.regrid_xy module fre.catalog module fre.catalog.frecatalog module fre.catalog.tests module fre.catalog.tests.test_fre_catalog module fre.check module fre.check.frecheck module fre.check.frecheckexample module fre.cmor module fre.cmor.cmor_mixer module fre.cmor.frecmor module fre.cmor.tests module fre.cmor.tests.test_cmor_run_subtool module fre.fre module fre.lazy_group module fre.list module fre.list.frelist module fre.list.frelistexample module fre.make module fre.make.createCheckout module fre.make.createCompile module fre.make.createDocker module fre.make.createMakefile module fre.make.fremake module fre.make.runFremake module fre.make.tests module fre.make.tests.test_create_makefile module

fre.pp module fre.pp.checkoutScript module fre.pp.configure_script_xml module fre.pp.configure_script_yaml module fre.pp.frepp module fre.pp.install module fre.pp.run module fre.pp.status module fre.pp.tests module fre.pp.tests.test_configure_script_yaml module fre.pp.tests.test_rose_quoting module fre.pp.validate module fre.pp.wrapper module fre.run module fre.run.frerun module fre.run.frerunexample module fre.test module fre.test.fretest module fre.test.fretestexample module fre.tests module fre.tests.test_fre_app_cli module fre.tests.test_fre_catalog_cli module fre.tests.test_fre_check_cli module fre.tests.test_fre_cli module fre.tests.test_fre_cmor_cli module fre.tests.test_fre_list_cli module fre.tests.test_fre_make_cli module fre.tests.test_fre_pp_cli module fre.tests.test_fre_run_cli module fre.tests.test_fre_test_cli module fre.tests.test_fre_yamltools_cli module fre.yamltools module fre.yamltools.combine_yamls module fre.yamltools.freyamltools module fre.yamltools.tests module fre.yamltools.tests.test_combine_yamls module frelist_xpath() (in module fre.pp.configure_script_xml) fremake_run() (in module fre.make.runFremake) frenctoolsTimeAverager (class in fre.app.generate_time_averages.frenctoolsTimeAverager) frepytoolsTimeAverager (class in fre.app.generate_time_averages.frepytoolsTimeAverager) freq_from_legacy() (in module fre.pp.configure_script_xml) freq_to_date_format() (in module fre.app.regrid_xy.regrid_xy)

G

generate_timavg() (fre.app.generate_time_averages.cdoTimeAverager.cdoTimeAverager method) (fre.app.generate_time_averages.frenctoolsTimeAverager.frenctoolsTimeAverager method) (fre.app.generate_time_averages.frepytoolsTimeAverager.frepytoolsTimeAverager method) (fre.app.generate_time_averages.timeAverager.timeAverager method) generate_time_average() (in module fre.app.generate_time_averages.generate_time_averages) get_combined_compileyaml() (in module fre.yamltools.combine_yamls) get_combined_ppyaml() (in module fre.yamltools.combine_yamls)

get_command() (fre.lazy_group.LazyGroup method) get_compile_paths() (in module fre.yamltools.combine_yamls) get_iso_datetimes() (in module fre.cmor.cmor_mixer) get_mosaic_file_name() (in module fre.app.regrid_xy.regrid_xy) get_mosaic_grid_file_name() (in module fre.app.regrid_xy.regrid_xy) get_var_filenames() (in module fre.cmor.cmor_mixer) get_vertical_dimension() (in module fre.cmor.cmor_mixer)

I

init_compile_yaml (class in fre.yamltools.combine_yamls)

init_pp_yaml (class in fre.yamltools.combine_yamls)

J

join_constructor() (in module fre.yamltools.combine_yamls)

L

LazyGroup (class in fre.lazy_group)

list_commands() (fre.lazy_group.LazyGroup method)

M

main() (in module fre.app.regrid_xy.regrid_xy) (in module fre.pp.configure_script_xml) make_component_list() (in module fre.app.regrid_xy.regrid_xy) make_regrid_var_list() (in module fre.app.regrid_xy.regrid_xy) makefile_create() (in module fre.make.createMakefile) mask_field_above_surface_pressure() (in module fre.app.mask_atmos_plevel) module fre fre.app fre.app.freapp fre.app.generate_time_averages fre.app.generate_time_averages.cdoTimeAverager fre.app.generate_time_averages.frenctoolsTimeAverager fre.app.generate_time_averages.frepytoolsTimeAverager fre.app.generate_time_averages.generate_time_averages fre.app.generate_time_averages.tests fre.app.generate_time_averages.tests.test_generate_time_averages fre.app.generate_time_averages.timeAverager fre.app.mask_atmos_plevel fre.app.regrid_xy fre.app.regrid_xy.regrid_xy fre.catalog fre.catalog.frecatalog fre.catalog.tests fre.catalog.tests.test_fre_catalog fre.check fre.check.frecheck fre.check.frecheckexample fre.cmor fre.cmor.cmor_mixer fre.cmor.frecmor fre.cmor.tests fre.cmor.tests.test_cmor_run_subtool fre.fre fre.lazy_group fre.list fre.list.frelist fre.list.frelistexample fre.make fre.make.createCheckout fre.make.createCompile fre.make.createDocker fre.make.createMakefile fre.make.fremake fre.make.runFremake fre.make.tests fre.make.tests.test_create_makefile fre.pp fre.pp.checkoutScript fre.pp.configure_script_xml fre.pp.configure_script_yaml fre.pp.frepp fre.pp.install fre.pp.run fre.pp.status fre.pp.tests fre.pp.tests.test_configure_script_yaml fre.pp.tests.test_rose_quoting fre.pp.validate fre.pp.wrapper fre.run fre.run.frerun fre.run.frerunexample fre.test fre.test.fretest fre.test.fretestexample fre.tests fre.tests.test_fre_app_cli fre.tests.test_fre_catalog_cli fre.tests.test_fre_check_cli fre.tests.test_fre_cli fre.tests.test_fre_cmor_cli fre.tests.test_fre_list_cli fre.tests.test_fre_make_cli fre.tests.test_fre_pp_cli fre.tests.test_fre_run_cli fre.tests.test_fre_test_cli fre.tests.test_fre_yamltools_cli fre.yamltools fre.yamltools.combine_yamls fre.yamltools.freyamltools fre.yamltools.tests fre.yamltools.tests.test_combine_yamls

P

pkg (fre.app.generate_time_averages.timeAverager.timeAverager attribute) post_write() (in module fre.app.mask_atmos_plevel)

preprocess() (in module fre.app.mask_atmos_plevel) pressure_coordinate() (in module fre.app.mask_atmos_plevel)

Q

quote_rose_values() (in module fre.pp.configure_script_yaml)

R

regrid_xy() (in module fre.app.regrid_xy.regrid_xy) rewrite_netcdf_file_var() (in module fre.cmor.cmor_mixer)

rose_init() (in module fre.pp.configure_script_yaml) run_avgtype_pkg_calculations() (in module fre.app.generate_time_averages.tests.test_generate_time_averages)

S

safe_rose_config_get() (in module fre.app.regrid_xy.regrid_xy) set_netcdf_encoding() (in module fre.app.mask_atmos_plevel)

set_rose_apps() (in module fre.pp.configure_script_yaml) set_rose_suite() (in module fre.pp.configure_script_yaml) stddev_type (fre.app.generate_time_averages.timeAverager.timeAverager attribute)

T

test_analysisyaml_exists() (in module fre.yamltools.tests.test_combine_yamls) test_bm_makefile_creation() (in module fre.make.tests.test_create_makefile) test_boolean() (in module fre.pp.tests.test_rose_quoting) test_cdo_time_avgs() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_cdo_time_unwgt_avgs() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_cdo_time_unwgt_stddevs() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_cli_fre() (in module fre.tests.test_fre_cli) test_cli_fre_app() (in module fre.tests.test_fre_app_cli) test_cli_fre_app_gen_time_averages() (in module fre.tests.test_fre_app_cli) test_cli_fre_app_gen_time_averages_help() (in module fre.tests.test_fre_app_cli) test_cli_fre_app_gen_time_averages_opt_dne() (in module fre.tests.test_fre_app_cli) test_cli_fre_app_help() (in module fre.tests.test_fre_app_cli) test_cli_fre_app_opt_dne() (in module fre.tests.test_fre_app_cli) test_cli_fre_app_regrid() (in module fre.tests.test_fre_app_cli) test_cli_fre_app_regrid_help() (in module fre.tests.test_fre_app_cli) test_cli_fre_app_regrid_opt_dne() (in module fre.tests.test_fre_app_cli) test_cli_fre_app_regrid_test_case_1() (in module fre.tests.test_fre_app_cli) test_cli_fre_catalog() (in module fre.tests.test_fre_catalog_cli) test_cli_fre_catalog_builder() (in module fre.tests.test_fre_catalog_cli) test_cli_fre_catalog_builder_help() (in module fre.tests.test_fre_catalog_cli) test_cli_fre_catalog_help() (in module fre.tests.test_fre_catalog_cli) test_cli_fre_catalog_merge() (in module fre.tests.test_fre_catalog_cli) test_cli_fre_catalog_merge_help() (in module fre.tests.test_fre_catalog_cli) test_cli_fre_catalog_opt_dne() (in module fre.tests.test_fre_catalog_cli) test_cli_fre_check() (in module fre.tests.test_fre_check_cli) test_cli_fre_check_help() (in module fre.tests.test_fre_check_cli) test_cli_fre_check_opt_dne() (in module fre.tests.test_fre_check_cli) test_cli_fre_cmor() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_help() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_opt_dne() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_run() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_run_case1() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_run_case2() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_run_help() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_run_opt_dne() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_help() (in module fre.tests.test_fre_cli) test_cli_fre_list() (in module fre.tests.test_fre_list_cli) test_cli_fre_list_help() (in module fre.tests.test_fre_list_cli) test_cli_fre_list_opt_dne() (in module fre.tests.test_fre_list_cli) test_cli_fre_make() (in module fre.tests.test_fre_make_cli) test_cli_fre_make_create_checkout_baremetal() (in module fre.tests.test_fre_make_cli) test_cli_fre_make_create_checkout_container() (in module fre.tests.test_fre_make_cli) test_cli_fre_make_help() (in module fre.tests.test_fre_make_cli) test_cli_fre_make_opt_dne() (in module fre.tests.test_fre_make_cli) test_cli_fre_option_dne() (in module fre.tests.test_fre_cli) test_cli_fre_pp() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_checkout() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_checkout_help() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_checkout_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_configure_xml() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_configure_xml_help() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_configure_xml_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_configure_yaml() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_configure_yaml_help() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_configure_yaml_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_help() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_install() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_install_help() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_install_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_run() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_run_help() (in module fre.tests.test_fre_pp_cli)

test_cli_fre_pp_run_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_status() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_status_help() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_status_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_validate() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_validate_help() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_validate_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_wrapper() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_wrapper_help() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_wrapper_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_run() (in module fre.tests.test_fre_run_cli) test_cli_fre_run_help() (in module fre.tests.test_fre_run_cli) test_cli_fre_run_opt_dne() (in module fre.tests.test_fre_run_cli) test_cli_fre_test() (in module fre.tests.test_fre_test_cli) test_cli_fre_test_help() (in module fre.tests.test_fre_test_cli) test_cli_fre_test_opt_dne() (in module fre.tests.test_fre_test_cli) test_cli_fre_yamltools() (in module fre.tests.test_fre_yamltools_cli) test_cli_fre_yamltools_help() (in module fre.tests.test_fre_yamltools_cli) test_cli_fre_yamltools_opt_dne() (in module fre.tests.test_fre_yamltools_cli) test_combined_compileyaml_combinefail() (in module fre.yamltools.tests.test_combine_yamls) test_combined_compileyaml_validatefail() (in module fre.yamltools.tests.test_combine_yamls) test_combined_compileyaml_validation() (in module fre.yamltools.tests.test_combine_yamls) test_combined_ppyaml_validation() (in module fre.yamltools.tests.test_combine_yamls) test_combinedyaml_exists() (in module fre.pp.tests.test_configure_script_yaml) test_compare_cdo_to_fre_nctools() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_compare_fre_cli_to_cdo() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_compare_fre_cli_to_fre_nctools() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_compare_unwgt_fre_cli_to_unwgt_cdo() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_compileyaml_exists() (in module fre.make.tests.test_create_makefile) (in module fre.yamltools.tests.test_combine_yamls) test_configure_script() (in module fre.pp.tests.test_configure_script_yaml) test_container_makefile_creation() (in module fre.make.tests.test_create_makefile) test_expyaml_exists() (in module fre.yamltools.tests.test_combine_yamls) test_fre_catalog_import() (in module fre.catalog.tests.test_fre_catalog) test_fre_cli_time_avgs() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_fre_cli_time_avgs_stddevs() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_fre_cli_time_unwgt_avgs() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_fre_cli_time_unwgt_avgs_stddevs() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_fre_cmor_run_subtool_case1() (in module fre.cmor.tests.test_cmor_run_subtool) test_fre_cmor_run_subtool_case1_output_compare_data() (in module fre.cmor.tests.test_cmor_run_subtool) test_fre_cmor_run_subtool_case1_output_compare_metadata() (in module fre.cmor.tests.test_cmor_run_subtool) test_fre_cmor_run_subtool_case2() (in module fre.cmor.tests.test_cmor_run_subtool) test_fre_cmor_run_subtool_case2_output_compare_data() (in module fre.cmor.tests.test_cmor_run_subtool) test_fre_cmor_run_subtool_case2_output_compare_metadata() (in module fre.cmor.tests.test_cmor_run_subtool) test_import() (in module fre.app.regrid_xy.regrid_xy) test_merged_compile_yamls() (in module fre.yamltools.tests.test_combine_yamls) test_merged_pp_yamls() (in module fre.yamltools.tests.test_combine_yamls) test_modelyaml_exists() (in module fre.make.tests.test_create_makefile) (in module fre.yamltools.tests.test_combine_yamls) test_monthly_cdo_time_unwgt_avgs() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_monthly_cdo_time_unwgt_stddevs() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_platformyaml_exists() (in module fre.make.tests.test_create_makefile) (in module fre.yamltools.tests.test_combine_yamls) test_seasonal_cdo_time_unwgt_avgs() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_seasonal_cdo_time_unwgt_stddevs() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_setup_cmor_cmip_table_repo() (in module fre.cmor.tests.test_cmor_run_subtool) test_setup_fre_cmor_run_subtool() (in module fre.cmor.tests.test_cmor_run_subtool) test_setup_fre_cmor_run_subtool_case2() (in module fre.cmor.tests.test_cmor_run_subtool) test_string() (in module fre.pp.tests.test_rose_quoting) test_time_avg_file_dir_exists() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_time_avg_input_file_exists() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) timeAverager (class in fre.app.generate_time_averages.timeAverager) truncate_date() (in module fre.app.regrid_xy.regrid_xy)

U

unwgt (fre.app.generate_time_averages.timeAverager.timeAverager attribute)

V

validate_yaml() (in module fre.pp.configure_script_yaml)

var (fre.app.generate_time_averages.timeAverager.timeAverager attribute) var_has_time_units() (fre.app.generate_time_averages.timeAverager.timeAverager method)

W

write_dataset() (in module fre.app.mask_atmos_plevel)

Y

yaml_load() (in module fre.pp.configure_script_yaml) (in module fre.yamltools.combine_yamls)

yamlInfo() (in module fre.pp.configure_script_yaml)