Index

A

avg_type (fre.app.generate_time_averages.timeAverager.timeAverager attribute)

C

cdoTimeAverager (class in fre.app.generate_time_averages.cdoTimeAverager) check() (in module fre.pp.nccheck_script) check_dataset_for_ocean_grid() (in module fre.cmor.cmor_helpers) check_interp_method() (in module fre.app.regrid_xy.regrid_xy) check_path_existence() (in module fre.cmor.cmor_yamler) check_per_component_settings() (in module fre.app.regrid_xy.regrid_xy) check_test_function() (in module fre.check.frecheckexample) checkout_create() (in module fre.make.create_checkout_script) checkout_template() (in module fre.pp.checkout_script) chunk_from_legacy() (in module fre.pp.configure_script_xml) clean_yaml() (fre.yamltools.cmor_info_parser.CMORYaml method) (fre.yamltools.combine_yamls.init_compile_yaml method) (fre.yamltools.combine_yamls.init_pp_yaml method) (fre.yamltools.compile_info_parser.InitCompileYaml method) (fre.yamltools.pp_info_parser.InitPPYaml method) cmor_find_subtool() (in module fre.cmor.cmor_finder) cmor_run_subtool() (in module fre.cmor.cmor_mixer) cmor_yaml_subtool() (in module fre.cmor.cmor_yamler) cmorize_all_variables_in_dir() (in module fre.cmor.cmor_mixer) cmorize_target_var_files() (in module fre.cmor.cmor_mixer) CMORYaml (class in fre.yamltools.cmor_info_parser)

combine_analysis() (fre.yamltools.combine_yamls.init_pp_yaml method) (fre.yamltools.pp_info_parser.InitPPYaml method) combine_compile() (fre.yamltools.combine_yamls.init_compile_yaml method) (fre.yamltools.compile_info_parser.InitCompileYaml method) combine_experiment() (fre.yamltools.cmor_info_parser.CMORYaml method) (fre.yamltools.combine_yamls.init_pp_yaml method) (fre.yamltools.pp_info_parser.InitPPYaml method) combine_model() (fre.yamltools.cmor_info_parser.CMORYaml method) (fre.yamltools.combine_yamls.init_compile_yaml method) (fre.yamltools.combine_yamls.init_pp_yaml method) (fre.yamltools.compile_info_parser.InitCompileYaml method) (fre.yamltools.pp_info_parser.InitPPYaml method) combine_platforms() (fre.yamltools.combine_yamls.init_compile_yaml method) (fre.yamltools.compile_info_parser.InitCompileYaml method) combined_compile_existcheck() (in module fre.yamltools.combine_yamls) compile_create() (in module fre.make.create_compile_script) consolidate_yamls() (in module fre.yamltools.combine_yamls) (in module fre.yamltools.combine_yamls_script) conv_mip_to_bronx_freq() (in module fre.cmor.cmor_yamler) create_lev_bnds() (in module fre.cmor.cmor_helpers) create_tmp_dir() (in module fre.cmor.cmor_helpers)

D

dockerfile_create() (in module fre.make.create_docker_script)

duration_to_seconds() (in module fre.pp.configure_script_xml)

E

experiment_check() (in module fre.yamltools.cmor_info_parser) (in module fre.yamltools.combine_yamls) (in module fre.yamltools.pp_info_parser)

F

find_statics_file() (in module fre.cmor.cmor_helpers) fre module fre.analysis module fre.analysis.freanalysis module fre.analysis.subtools module fre.analysis.tests module fre.analysis.tests.test_subtools module fre.app module fre.app.freapp module fre.app.generate_time_averages module fre.app.generate_time_averages.cdoTimeAverager module fre.app.generate_time_averages.frenctoolsTimeAverager module fre.app.generate_time_averages.frepytoolsTimeAverager module fre.app.generate_time_averages.generate_time_averages module fre.app.generate_time_averages.tests module fre.app.generate_time_averages.tests.test_generate_time_averages module fre.app.generate_time_averages.timeAverager module fre.app.mask_atmos_plevel module fre.app.regrid_xy module fre.app.regrid_xy.regrid_xy module fre.app.regrid_xy.tests module fre.app.regrid_xy.tests.test_regrid_xy module fre.catalog module fre.catalog.frecatalog module fre.catalog.tests module fre.catalog.tests.test_fre_catalog module fre.check module fre.check.frecheck module fre.check.frecheckexample module fre.cmor module fre.cmor.cmor_finder module fre.cmor.cmor_helpers module fre.cmor.cmor_mixer module fre.cmor.cmor_yamler module fre.cmor.frecmor module fre.cmor.tests module fre.cmor.tests.test_cmor_find_subtool module fre.cmor.tests.test_cmor_helpers_update_grid_label module fre.cmor.tests.test_cmor_run_subtool module fre.cmor.tests.test_cmor_run_subtool_ppan_only module fre.fre module fre.lazy_group module fre.list_ module fre.list_.frelist module fre.list_.list_experiments_script module fre.list_.list_platforms_script module fre.list_.list_pp_components_script module fre.make module fre.make.create_checkout_script module fre.make.create_compile_script module fre.make.create_docker_script module fre.make.create_makefile_script module fre.make.fremake module fre.make.run_fremake_script module fre.make.tests module fre.make.tests.compilation module fre.make.tests.compilation.test_run_fremake_builds module fre.make.tests.test_create_checkout module

fre.make.tests.test_create_compile module fre.make.tests.test_create_dockerfile module fre.make.tests.test_create_makefile module fre.make.tests.test_run_fremake module fre.pp module fre.pp.checkout_script module fre.pp.configure_script_xml module fre.pp.configure_script_yaml module fre.pp.frepp module fre.pp.histval_script module fre.pp.install_script module fre.pp.nccheck_script module fre.pp.ppval_script module fre.pp.run_script module fre.pp.split_netcdf_script module fre.pp.status_script module fre.pp.tests module fre.pp.tests.test_configure_script_yaml module fre.pp.tests.test_histval_script module fre.pp.tests.test_nccheck_script module fre.pp.tests.test_ppval_script module fre.pp.tests.test_rose_quoting module fre.pp.tests.test_split_netcdf module fre.pp.trigger_script module fre.pp.validate_script module fre.pp.wrapper_script module fre.run module fre.run.frerun module fre.run.frerunexample module fre.tests module fre.tests.test_fre_analysis_cli module fre.tests.test_fre_app_cli module fre.tests.test_fre_catalog_cli module fre.tests.test_fre_check_cli module fre.tests.test_fre_cli module fre.tests.test_fre_cmor_cli module fre.tests.test_fre_list_cli module fre.tests.test_fre_make_cli module fre.tests.test_fre_pp_cli module fre.tests.test_fre_run_cli module fre.tests.test_fre_yamltools_cli module fre.yamltools module fre.yamltools.cmor_info_parser module fre.yamltools.combine_yamls module fre.yamltools.combine_yamls_script module fre.yamltools.compile_info_parser module fre.yamltools.constructors module fre.yamltools.freyamltools module fre.yamltools.helpers module fre.yamltools.pp_info_parser module fre.yamltools.tests module fre.yamltools.tests.test_combine_yamls module fre.yamltools.tests.test_combine_yamls_script module fre_outfile_name() (in module fre.pp.split_netcdf_script) frelist_xpath() (in module fre.pp.configure_script_xml) fremake_run() (in module fre.make.run_fremake_script) frenctoolsTimeAverager (class in fre.app.generate_time_averages.frenctoolsTimeAverager) frepytoolsTimeAverager (class in fre.app.generate_time_averages.frepytoolsTimeAverager) freq_from_legacy() (in module fre.pp.configure_script_xml) freq_to_date_format() (in module fre.app.regrid_xy.regrid_xy) from_dis_gimme_dis() (in module fre.cmor.cmor_helpers)

G

generate() (in module fre.app.generate_time_averages.generate_time_averages) generate_timavg() (fre.app.generate_time_averages.cdoTimeAverager.cdoTimeAverager method) (fre.app.generate_time_averages.frenctoolsTimeAverager.frenctoolsTimeAverager method) (fre.app.generate_time_averages.frepytoolsTimeAverager.frepytoolsTimeAverager method) (fre.app.generate_time_averages.timeAverager.timeAverager method) generate_time_average() (in module fre.app.generate_time_averages.generate_time_averages) get_bronx_freq_from_mip_table() (in module fre.cmor.cmor_yamler) get_combined_cmoryaml() (in module fre.yamltools.combine_yamls_script) get_combined_compileyaml() (in module fre.yamltools.combine_yamls) (in module fre.yamltools.combine_yamls_script)

get_combined_ppyaml() (in module fre.yamltools.combine_yamls) (in module fre.yamltools.combine_yamls_script) get_command() (fre.lazy_group.LazyGroup method) get_compile_paths() (in module fre.yamltools.combine_yamls) (in module fre.yamltools.compile_info_parser) get_iso_datetime_ranges() (in module fre.cmor.cmor_helpers) get_json_file_data() (in module fre.cmor.cmor_helpers) get_mosaic_file_name() (in module fre.app.regrid_xy.regrid_xy) get_mosaic_grid_file_name() (in module fre.app.regrid_xy.regrid_xy) get_vertical_dimension() (in module fre.cmor.cmor_helpers) getenot() (in module fre.pp.ppval_script)

I

init_compile_yaml (class in fre.yamltools.combine_yamls) init_pp_yaml (class in fre.yamltools.combine_yamls) InitCompileYaml (class in fre.yamltools.compile_info_parser)

InitPPYaml (class in fre.yamltools.pp_info_parser) install_analysis_package() (in module fre.analysis.subtools) install_subtool() (in module fre.pp.install_script) iso_to_bronx_chunk() (in module fre.cmor.cmor_yamler)

J

join_constructor() (in module fre.yamltools.constructors)

L

LazyGroup (class in fre.lazy_group) list_commands() (fre.lazy_group.LazyGroup method) list_experiments_subtool() (in module fre.list_.list_experiments_script)

list_platforms_subtool() (in module fre.list_.list_platforms_script) list_plugins() (in module fre.analysis.subtools) list_ppcomps_subtool() (in module fre.list_.list_pp_components_script)

M

main() (in module fre.app.regrid_xy.regrid_xy) (in module fre.pp.configure_script_xml) make_component_list() (in module fre.app.regrid_xy.regrid_xy) make_experiment_yaml() (in module fre.analysis.tests.test_subtools) make_regrid_var_list() (in module fre.app.regrid_xy.regrid_xy) make_simple_varlist() (in module fre.cmor.cmor_finder) makefile_create() (in module fre.make.create_makefile_script) mask_atmos_plevel_subtool() (in module fre.app.mask_atmos_plevel) mask_field_above_surface_pressure() (in module fre.app.mask_atmos_plevel) merge_cmor_yaml() (fre.yamltools.cmor_info_parser.CMORYaml method) merge_multiple_yamls() (fre.yamltools.combine_yamls.init_pp_yaml method) (fre.yamltools.pp_info_parser.InitPPYaml method) module fre fre.analysis fre.analysis.freanalysis fre.analysis.subtools fre.analysis.tests fre.analysis.tests.test_subtools fre.app fre.app.freapp fre.app.generate_time_averages fre.app.generate_time_averages.cdoTimeAverager fre.app.generate_time_averages.frenctoolsTimeAverager fre.app.generate_time_averages.frepytoolsTimeAverager fre.app.generate_time_averages.generate_time_averages fre.app.generate_time_averages.tests fre.app.generate_time_averages.tests.test_generate_time_averages fre.app.generate_time_averages.timeAverager fre.app.mask_atmos_plevel fre.app.regrid_xy fre.app.regrid_xy.regrid_xy fre.app.regrid_xy.tests fre.app.regrid_xy.tests.test_regrid_xy fre.catalog fre.catalog.frecatalog fre.catalog.tests fre.catalog.tests.test_fre_catalog fre.check fre.check.frecheck fre.check.frecheckexample fre.cmor fre.cmor.cmor_finder fre.cmor.cmor_helpers fre.cmor.cmor_mixer fre.cmor.cmor_yamler fre.cmor.frecmor fre.cmor.tests fre.cmor.tests.test_cmor_find_subtool fre.cmor.tests.test_cmor_helpers_update_grid_label fre.cmor.tests.test_cmor_run_subtool fre.cmor.tests.test_cmor_run_subtool_ppan_only fre.fre fre.lazy_group fre.list_ fre.list_.frelist fre.list_.list_experiments_script fre.list_.list_platforms_script fre.list_.list_pp_components_script fre.make fre.make.create_checkout_script fre.make.create_compile_script fre.make.create_docker_script fre.make.create_makefile_script fre.make.fremake fre.make.run_fremake_script fre.make.tests fre.make.tests.compilation fre.make.tests.compilation.test_run_fremake_builds fre.make.tests.test_create_checkout fre.make.tests.test_create_compile fre.make.tests.test_create_dockerfile fre.make.tests.test_create_makefile fre.make.tests.test_run_fremake fre.pp fre.pp.checkout_script fre.pp.configure_script_xml fre.pp.configure_script_yaml fre.pp.frepp fre.pp.histval_script fre.pp.install_script fre.pp.nccheck_script fre.pp.ppval_script fre.pp.run_script fre.pp.split_netcdf_script fre.pp.status_script fre.pp.tests fre.pp.tests.test_configure_script_yaml fre.pp.tests.test_histval_script fre.pp.tests.test_nccheck_script fre.pp.tests.test_ppval_script fre.pp.tests.test_rose_quoting fre.pp.tests.test_split_netcdf fre.pp.trigger_script fre.pp.validate_script fre.pp.wrapper_script fre.run fre.run.frerun fre.run.frerunexample fre.tests fre.tests.test_fre_analysis_cli fre.tests.test_fre_app_cli fre.tests.test_fre_catalog_cli fre.tests.test_fre_check_cli fre.tests.test_fre_cli fre.tests.test_fre_cmor_cli fre.tests.test_fre_list_cli fre.tests.test_fre_make_cli fre.tests.test_fre_pp_cli fre.tests.test_fre_run_cli fre.tests.test_fre_yamltools_cli fre.yamltools fre.yamltools.cmor_info_parser fre.yamltools.combine_yamls fre.yamltools.combine_yamls_script fre.yamltools.compile_info_parser fre.yamltools.constructors fre.yamltools.freyamltools fre.yamltools.helpers fre.yamltools.pp_info_parser fre.yamltools.tests fre.yamltools.tests.test_combine_yamls fre.yamltools.tests.test_combine_yamls_script

O

output_yaml() (in module fre.yamltools.helpers)

P

parse_yaml_for_varlist() (in module fre.pp.split_netcdf_script) pkg (fre.app.generate_time_averages.timeAverager.timeAverager attribute) post_write() (in module fre.app.mask_atmos_plevel) pp_run_subtool() (in module fre.pp.run_script)

preprocess() (in module fre.app.mask_atmos_plevel) pressure_coordinate() (in module fre.app.mask_atmos_plevel) print_data_minmax() (in module fre.cmor.cmor_helpers) print_var_content() (in module fre.cmor.cmor_finder)

Q

quick_combine() (in module fre.list_.list_experiments_script) (in module fre.list_.list_platforms_script) (in module fre.list_.list_pp_components_script)

quote_rose_values() (in module fre.pp.configure_script_yaml)

R

regrid_xy() (in module fre.app.regrid_xy.regrid_xy) remove() (in module fre.list_.list_experiments_script) (in module fre.list_.list_platforms_script) remove_tmp_yamlfiles() (fre.yamltools.combine_yamls.init_pp_yaml method) rewrite_netcdf_file_var() (in module fre.cmor.cmor_mixer)

rose_init() (in module fre.pp.configure_script_yaml) run_all_fre_pp_steps() (in module fre.pp.wrapper_script) run_analysis() (in module fre.analysis.subtools) run_avgtype_pkg_calculations() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) run_test_function() (in module fre.run.frerunexample)

S

safe_rose_config_get() (in module fre.app.regrid_xy.regrid_xy) set_coord_encoding() (in module fre.pp.split_netcdf_script) set_netcdf_encoding() (in module fre.app.mask_atmos_plevel) set_rose_apps() (in module fre.pp.configure_script_yaml)

set_rose_suite() (in module fre.pp.configure_script_yaml) set_var_encoding() (in module fre.pp.split_netcdf_script) split_file_xarray() (in module fre.pp.split_netcdf_script) split_netcdf() (in module fre.pp.split_netcdf_script) status_subtool() (in module fre.pp.status_script)

T

temp_dir() (in module fre.cmor.tests.test_cmor_find_subtool) temp_json_file() (in module fre.cmor.tests.test_cmor_helpers_update_grid_label) test_analysisyaml_exists() (in module fre.yamltools.tests.test_combine_yamls) (in module fre.yamltools.tests.test_combine_yamls_script) test_bad_platform() (in module fre.make.tests.test_create_compile) test_bad_platform_compilelog() (in module fre.make.tests.test_create_compile) test_bad_platform_option() (in module fre.make.tests.test_create_dockerfile) (in module fre.make.tests.test_run_fremake) test_bad_target() (in module fre.make.tests.test_create_compile) test_bad_target_compilelog() (in module fre.make.tests.test_create_compile) test_bad_target_option() (in module fre.make.tests.test_create_dockerfile) (in module fre.make.tests.test_run_fremake) test_bad_yamlpath_option() (in module fre.make.tests.test_create_dockerfile) (in module fre.make.tests.test_run_fremake) test_bm_makefile_creation() (in module fre.make.tests.test_create_makefile) test_boolean() (in module fre.pp.tests.test_rose_quoting) test_case_AERmonZ_ta_gr1() (in module fre.cmor.tests.test_cmor_run_subtool_ppan_only) test_case_Amon_ch4global_gn() (in module fre.cmor.tests.test_cmor_run_subtool_ppan_only) test_case_Amon_cl_gr1() (in module fre.cmor.tests.test_cmor_run_subtool_ppan_only) test_case_Amon_mc_gr1() (in module fre.cmor.tests.test_cmor_run_subtool_ppan_only) test_case_Emon_gppLut_gr1() (in module fre.cmor.tests.test_cmor_run_subtool_ppan_only) test_case_Lmon_lai_gr1() (in module fre.cmor.tests.test_cmor_run_subtool_ppan_only) test_case_Omon_so_gr() (in module fre.cmor.tests.test_cmor_run_subtool_ppan_only) test_case_Omon_sos_gn() (in module fre.cmor.tests.test_cmor_run_subtool_ppan_only) test_case_Omon_sos_gr() (in module fre.cmor.tests.test_cmor_run_subtool_ppan_only) test_cdo_time_avgs() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_cdo_time_avgs_two_files() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_cdo_time_unwgt_avgs() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_cdo_time_unwgt_avgs_two_files() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_cdo_time_unwgt_stddevs_two_files() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_checkout_execute() (in module fre.make.tests.test_create_checkout) test_checkout_no_parallel_checkout() (in module fre.make.tests.test_create_checkout) test_checkout_script_exists() (in module fre.make.tests.test_create_checkout) test_checkout_verbose() (in module fre.make.tests.test_create_checkout) test_cleanup() (in module fre.cmor.tests.test_cmor_run_subtool_ppan_only) (in module fre.pp.tests.test_configure_script_yaml) test_cli_fre() (in module fre.tests.test_fre_cli) test_cli_fre_analysis() (in module fre.tests.test_fre_analysis_cli) test_cli_fre_analysis_help() (in module fre.tests.test_fre_analysis_cli) test_cli_fre_analysis_install_help() (in module fre.tests.test_fre_analysis_cli) test_cli_fre_analysis_install_missing_url() (in module fre.tests.test_fre_analysis_cli) test_cli_fre_analysis_install_unknown_argument() (in module fre.tests.test_fre_analysis_cli) test_cli_fre_analysis_run_help() (in module fre.tests.test_fre_analysis_cli) test_cli_fre_analysis_run_missing_catalog() (in module fre.tests.test_fre_analysis_cli) test_cli_fre_analysis_run_missing_experiment_yaml() (in module fre.tests.test_fre_analysis_cli) test_cli_fre_analysis_run_missing_name() (in module fre.tests.test_fre_analysis_cli) test_cli_fre_analysis_run_missing_output_directory() (in module fre.tests.test_fre_analysis_cli) test_cli_fre_analysis_run_missing_output_yaml() (in module fre.tests.test_fre_analysis_cli) test_cli_fre_analysis_run_unknown_argument() (in module fre.tests.test_fre_analysis_cli) test_cli_fre_analysis_uninstall_help() (in module fre.tests.test_fre_analysis_cli) test_cli_fre_analysis_uninstall_missing_name() (in module fre.tests.test_fre_analysis_cli) test_cli_fre_analysis_uninstall_unknown_argument() (in module fre.tests.test_fre_analysis_cli) test_cli_fre_app() (in module fre.tests.test_fre_app_cli) test_cli_fre_app_gen_time_averages() (in module fre.tests.test_fre_app_cli) test_cli_fre_app_gen_time_averages_help() (in module fre.tests.test_fre_app_cli) test_cli_fre_app_gen_time_averages_opt_dne() (in module fre.tests.test_fre_app_cli) test_cli_fre_app_help() (in module fre.tests.test_fre_app_cli) test_cli_fre_app_opt_dne() (in module fre.tests.test_fre_app_cli) test_cli_fre_app_regrid() (in module fre.tests.test_fre_app_cli) test_cli_fre_app_regrid_help() (in module fre.tests.test_fre_app_cli) test_cli_fre_app_regrid_opt_dne() (in module fre.tests.test_fre_app_cli) test_cli_fre_app_regrid_test_case_1() (in module fre.tests.test_fre_app_cli) test_cli_fre_catalog() (in module fre.tests.test_fre_catalog_cli) test_cli_fre_catalog_builder() (in module fre.tests.test_fre_catalog_cli) test_cli_fre_catalog_builder_help() (in module fre.tests.test_fre_catalog_cli) test_cli_fre_catalog_help() (in module fre.tests.test_fre_catalog_cli) test_cli_fre_catalog_merge() (in module fre.tests.test_fre_catalog_cli) test_cli_fre_catalog_merge_help() (in module fre.tests.test_fre_catalog_cli) test_cli_fre_catalog_opt_dne() (in module fre.tests.test_fre_catalog_cli) test_cli_fre_check() (in module fre.tests.test_fre_check_cli) test_cli_fre_check_help() (in module fre.tests.test_fre_check_cli) test_cli_fre_check_opt_dne() (in module fre.tests.test_fre_check_cli) test_cli_fre_cmor() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_find() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_find_help() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_find_opt_dne() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_help() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_opt_dne() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_run() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_run_case1() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_run_case2() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_run_help() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_run_opt_dne() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_yaml() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_yaml_case1() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_yaml_help() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_cmor_yaml_opt_dne() (in module fre.tests.test_fre_cmor_cli) test_cli_fre_help() (in module fre.tests.test_fre_cli) test_cli_fre_list() (in module fre.tests.test_fre_list_cli) test_cli_fre_list_exps() (in module fre.tests.test_fre_list_cli) test_cli_fre_list_exps_help() (in module fre.tests.test_fre_list_cli) test_cli_fre_list_exps_opt_dne() (in module fre.tests.test_fre_list_cli) test_cli_fre_list_help() (in module fre.tests.test_fre_list_cli) test_cli_fre_list_opt_dne() (in module fre.tests.test_fre_list_cli) test_cli_fre_list_platforms() (in module fre.tests.test_fre_list_cli) test_cli_fre_make() (in module fre.tests.test_fre_make_cli) test_cli_fre_make_create_checkout_baremetal() (in module fre.tests.test_fre_make_cli) test_cli_fre_make_create_checkout_baremetal_npc() (in module fre.tests.test_fre_make_cli) test_cli_fre_make_create_checkout_cleanup() (in module fre.tests.test_fre_make_cli) test_cli_fre_make_create_checkout_container() (in module fre.tests.test_fre_make_cli) test_cli_fre_make_help() (in module fre.tests.test_fre_make_cli) test_cli_fre_make_opt_dne() (in module fre.tests.test_fre_make_cli) test_cli_fre_option_dne() (in module fre.tests.test_fre_cli) test_cli_fre_pp() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_checkout() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_checkout_case() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_checkout_help() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_checkout_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_configure_xml() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_configure_xml_help() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_configure_xml_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_configure_yaml() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_configure_yaml_fail1() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_configure_yaml_help() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_configure_yaml_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_help() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_install() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_install_help() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_install_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_run() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_run_help() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_run_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_split_netcdf() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_split_netcdf_help() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_split_netcdf_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_split_netcdf_wrapper() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_split_netcdf_wrapper_help() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_split_netcdf_wrapper_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_status() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_status_help() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_status_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_validate() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_validate_help() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_validate_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_wrapper() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_wrapper_help() (in module fre.tests.test_fre_pp_cli) test_cli_fre_pp_wrapper_opt_dne() (in module fre.tests.test_fre_pp_cli) test_cli_fre_run() (in module fre.tests.test_fre_run_cli) test_cli_fre_run_help() (in module fre.tests.test_fre_run_cli) test_cli_fre_run_opt_dne() (in module fre.tests.test_fre_run_cli) test_cli_fre_version() (in module fre.tests.test_fre_cli) test_cli_fre_yamltools() (in module fre.tests.test_fre_yamltools_cli) test_cli_fre_yamltools_combine_cmoryaml() (in module fre.tests.test_fre_yamltools_cli) test_cli_fre_yamltools_combine_help() (in module fre.tests.test_fre_yamltools_cli) test_cli_fre_yamltools_combine_opt_dne() (in module fre.tests.test_fre_yamltools_cli) test_cli_fre_yamltools_help() (in module fre.tests.test_fre_yamltools_cli) test_cli_fre_yamltools_opt_dne() (in module fre.tests.test_fre_yamltools_cli) test_combine_cmor_yaml() (in module fre.yamltools.tests.test_combine_yamls_script) test_combine_pp_yamls() (in module fre.yamltools.tests.test_combine_yamls) (in module fre.yamltools.tests.test_combine_yamls_script)

test_combined_compileyaml_combinefail() (in module fre.yamltools.tests.test_combine_yamls) (in module fre.yamltools.tests.test_combine_yamls_script) test_combined_compileyaml_validatefail() (in module fre.yamltools.tests.test_combine_yamls) (in module fre.yamltools.tests.test_combine_yamls_script) test_combined_compileyaml_validation() (in module fre.yamltools.tests.test_combine_yamls) (in module fre.yamltools.tests.test_combine_yamls_script) test_combined_ppyaml_validation() (in module fre.yamltools.tests.test_combine_yamls) (in module fre.yamltools.tests.test_combine_yamls_script) test_combinedyaml_exists() (in module fre.pp.tests.test_configure_script_yaml) test_compare_cdo_to_fre_nctools() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_compare_fre_cli_to_cdo() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_compare_fre_cli_to_fre_nctools() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_compare_unwgt_fre_cli_to_unwgt_cdo() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_compile_creation() (in module fre.make.tests.test_create_compile) test_compile_executable_failure() (in module fre.make.tests.test_create_compile) test_compileyaml_exists() (in module fre.make.tests.test_create_compile) (in module fre.make.tests.test_create_dockerfile) (in module fre.make.tests.test_create_makefile) (in module fre.make.tests.test_run_fremake) (in module fre.yamltools.tests.test_combine_yamls) (in module fre.yamltools.tests.test_combine_yamls_script) test_configure_script() (in module fre.pp.tests.test_configure_script_yaml) test_container2step_makefile_creation() (in module fre.make.tests.test_create_makefile) test_container_build_script_creation() (in module fre.make.tests.test_create_dockerfile) test_container_dir_creation() (in module fre.make.tests.test_create_dockerfile) test_container_makefile_creation() (in module fre.make.tests.test_create_makefile) test_create_dockerfile() (in module fre.make.tests.test_create_dockerfile) test_dockerfile_contents() (in module fre.make.tests.test_create_dockerfile) test_dockerfile_creation() (in module fre.make.tests.test_create_dockerfile) test_expyaml_exists() (in module fre.yamltools.tests.test_combine_yamls) (in module fre.yamltools.tests.test_combine_yamls_script) test_failure_wrong_datetime_regrid_xy() (in module fre.app.regrid_xy.tests.test_regrid_xy) test_fre_catalog_import() (in module fre.catalog.tests.test_fre_catalog) test_fre_cli_time_avgs() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_fre_cli_time_avgs_stddevs_two_files() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_fre_cli_time_avgs_two_files() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_fre_cli_time_unwgt_avgs() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_fre_cli_time_unwgt_avgs_stddevs_two_files() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_fre_cli_time_unwgt_avgs_two_files() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_fre_cmor_run_subtool_case1() (in module fre.cmor.tests.test_cmor_run_subtool) test_fre_cmor_run_subtool_case1_output_compare_data() (in module fre.cmor.tests.test_cmor_run_subtool) test_fre_cmor_run_subtool_case1_output_compare_metadata() (in module fre.cmor.tests.test_cmor_run_subtool) test_fre_cmor_run_subtool_case2() (in module fre.cmor.tests.test_cmor_run_subtool) test_fre_cmor_run_subtool_case2_output_compare_data() (in module fre.cmor.tests.test_cmor_run_subtool) test_fre_cmor_run_subtool_case2_output_compare_metadata() (in module fre.cmor.tests.test_cmor_run_subtool) test_fre_version() (in module fre.tests.test_fre_cli) test_histval() (in module fre.pp.tests.test_histval_script) test_import() (in module fre.app.regrid_xy.regrid_xy) test_import_regrid_xy() (in module fre.app.regrid_xy.tests.test_regrid_xy) test_install_analysis_package() (in module fre.analysis.tests.test_subtools) test_invalid_json_file() (in module fre.cmor.tests.test_cmor_helpers_update_grid_label) test_list() (in module fre.pp.tests.test_rose_quoting) test_make_fregrid_comparison_input() (in module fre.app.regrid_xy.tests.test_regrid_xy) test_make_hgrid_gold_input() (in module fre.app.regrid_xy.tests.test_regrid_xy) test_make_ncgen3_nc_inputs() (in module fre.app.regrid_xy.tests.test_regrid_xy) test_make_ncgen_grid_spec_nc_inputs() (in module fre.app.regrid_xy.tests.test_regrid_xy) test_make_ncgen_tile_nc_inputs() (in module fre.app.regrid_xy.tests.test_regrid_xy) test_make_simple_varlist() (in module fre.cmor.tests.test_cmor_find_subtool) test_merged_compile_yamls() (in module fre.yamltools.tests.test_combine_yamls) (in module fre.yamltools.tests.test_combine_yamls_script) test_merged_pp_yamls() (in module fre.yamltools.tests.test_combine_yamls) (in module fre.yamltools.tests.test_combine_yamls_script) test_missing_grid_field() (in module fre.cmor.tests.test_cmor_helpers_update_grid_label) test_missing_grid_label_field() (in module fre.cmor.tests.test_cmor_helpers_update_grid_label) test_modelyaml_exists() (in module fre.make.tests.test_create_compile) (in module fre.make.tests.test_create_dockerfile) (in module fre.make.tests.test_create_makefile) (in module fre.make.tests.test_run_fremake) (in module fre.yamltools.tests.test_combine_yamls) (in module fre.yamltools.tests.test_combine_yamls_script) test_monthly_cdo_time_unwgt_avgs() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_monthly_cdo_time_unwgt_avgs_two_files() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_monthly_cdo_time_unwgt_stddevs_two_files() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_multi_target() (in module fre.make.tests.test_create_compile) test_nccheck() (in module fre.pp.tests.test_nccheck_script) test_nccmp1_regrid_xy() (in module fre.app.regrid_xy.tests.test_regrid_xy) test_nccmp2_regrid_xy() (in module fre.app.regrid_xy.tests.test_regrid_xy) test_no_op_platform() (in module fre.make.tests.test_create_dockerfile) test_nonexistent_file() (in module fre.cmor.tests.test_cmor_helpers_update_grid_label) test_nullyaml_exists() (in module fre.make.tests.test_create_checkout) test_nullyaml_filled() (in module fre.make.tests.test_create_checkout) test_parse_yaml() (in module fre.pp.tests.test_split_netcdf) test_platformyaml_exists() (in module fre.make.tests.test_create_compile) (in module fre.make.tests.test_create_dockerfile) (in module fre.make.tests.test_create_makefile) (in module fre.make.tests.test_run_fremake) (in module fre.yamltools.tests.test_combine_yamls) (in module fre.yamltools.tests.test_combine_yamls_script) test_ppval() (in module fre.pp.tests.test_ppval_script) test_regrid_one_for_two_comps() (in module fre.app.regrid_xy.tests.test_regrid_xy) test_run_analysis() (in module fre.analysis.tests.test_subtools) test_run_fremake_bad_target() (in module fre.make.tests.test_run_fremake) test_run_fremake_build_script_creation_container() (in module fre.make.tests.test_run_fremake) test_run_fremake_build_script_creation_container_2stage() (in module fre.make.tests.test_run_fremake) test_run_fremake_checkout_script_creation_container() (in module fre.make.tests.test_run_fremake) test_run_fremake_checkout_script_creation_container_2stage() (in module fre.make.tests.test_run_fremake) test_run_fremake_checkout_script_creation_multijob() (in module fre.make.tests.test_run_fremake) test_run_fremake_checkout_script_creation_multitarget() (in module fre.make.tests.test_run_fremake) test_run_fremake_checkout_script_creation_serial() (in module fre.make.tests.test_run_fremake) test_run_fremake_compile_script_creation_multijob() (in module fre.make.tests.test_run_fremake) test_run_fremake_compile_script_creation_multitarget() (in module fre.make.tests.test_run_fremake) test_run_fremake_compile_script_creation_serial() (in module fre.make.tests.test_run_fremake) test_run_fremake_container() (in module fre.make.tests.test_run_fremake) test_run_fremake_container_2stage() (in module fre.make.tests.test_run_fremake) test_run_fremake_container_build() (in module fre.make.tests.compilation.test_run_fremake_builds) test_run_fremake_container_build_notransfer() (in module fre.make.tests.compilation.test_run_fremake_builds) test_run_fremake_dockerfile_creation_container() (in module fre.make.tests.test_run_fremake) test_run_fremake_dockerfile_creation_container_2stage() (in module fre.make.tests.test_run_fremake) test_run_fremake_makefile_creation_container() (in module fre.make.tests.test_run_fremake) test_run_fremake_makefile_creation_container_2stage() (in module fre.make.tests.test_run_fremake) test_run_fremake_makefile_creation_multijob() (in module fre.make.tests.test_run_fremake) test_run_fremake_makefile_creation_multitarget() (in module fre.make.tests.test_run_fremake) test_run_fremake_makefile_creation_serial() (in module fre.make.tests.test_run_fremake) test_run_fremake_multijob() (in module fre.make.tests.test_run_fremake) test_run_fremake_multijob_compile() (in module fre.make.tests.compilation.test_run_fremake_builds) test_run_fremake_multiple_targets() (in module fre.make.tests.test_run_fremake) test_run_fremake_run_script_creation_container() (in module fre.make.tests.test_run_fremake) test_run_fremake_run_script_creation_container_2stage() (in module fre.make.tests.test_run_fremake) test_run_fremake_serial() (in module fre.make.tests.test_run_fremake) test_run_fremake_serial_compile() (in module fre.make.tests.compilation.test_run_fremake_builds) test_run_unknown_analysis() (in module fre.analysis.tests.test_subtools) test_runscript_creation() (in module fre.make.tests.test_create_dockerfile) test_seasonal_cdo_time_unwgt_avgs() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_seasonal_cdo_time_unwgt_avgs_two_files() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_seasonal_cdo_time_unwgt_stddevs_two_files() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_setup_clean_up() (in module fre.app.regrid_xy.tests.test_regrid_xy) test_setup_cmor_cmip_table_repo() (in module fre.cmor.tests.test_cmor_run_subtool) test_setup_fre_cmor_run_subtool() (in module fre.cmor.tests.test_cmor_run_subtool) test_setup_fre_cmor_run_subtool_case2() (in module fre.cmor.tests.test_cmor_run_subtool) test_setup_global_work_dirs() (in module fre.app.regrid_xy.tests.test_regrid_xy) test_setup_histval() (in module fre.pp.tests.test_histval_script) test_setup_nccheck() (in module fre.pp.tests.test_nccheck_script) test_setup_ppval() (in module fre.pp.tests.test_ppval_script) test_setup_test_files() (in module fre.tests.test_fre_cmor_cli) test_split_file_cleanup() (in module fre.pp.tests.test_split_netcdf) test_split_file_data() (in module fre.pp.tests.test_split_netcdf) test_split_file_metadata() (in module fre.pp.tests.test_split_netcdf) test_split_file_run() (in module fre.pp.tests.test_split_netcdf) test_split_file_setup() (in module fre.pp.tests.test_split_netcdf) test_string() (in module fre.pp.tests.test_rose_quoting) test_success_no_tar_grid_spec_regrid_xy() (in module fre.app.regrid_xy.tests.test_regrid_xy) test_success_tar_grid_spec_regrid_xy() (in module fre.app.regrid_xy.tests.test_regrid_xy) test_time_avg_file_dir_exists() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_time_avg_file_dir_exists_two_files() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_time_avg_input_file_exists() (in module fre.app.generate_time_averages.tests.test_generate_time_averages) test_untar_inputs() (in module fre.app.regrid_xy.tests.test_regrid_xy) test_update_grid_label_and_grid_success() (in module fre.cmor.tests.test_cmor_helpers_update_grid_label) timeAverager (class in fre.app.generate_time_averages.timeAverager) trigger() (in module fre.pp.trigger_script) truncate_date() (in module fre.app.regrid_xy.regrid_xy)

U

uninstall_analysis_package() (in module fre.analysis.subtools)

unwgt (fre.app.generate_time_averages.timeAverager.timeAverager attribute) update_grid_and_label() (in module fre.cmor.cmor_helpers)

V

validate() (in module fre.pp.histval_script) (in module fre.pp.ppval_script) validate_subtool() (in module fre.pp.validate_script)

validate_yaml() (in module fre.list_.list_platforms_script) (in module fre.pp.configure_script_yaml) var (fre.app.generate_time_averages.timeAverager.timeAverager attribute) var_has_time_units() (fre.app.generate_time_averages.timeAverager.timeAverager method)

W

write_dataset() (in module fre.app.mask_atmos_plevel)

Y

yaml_info() (in module fre.pp.configure_script_yaml)

yaml_load() (in module fre.pp.configure_script_yaml) (in module fre.yamltools.helpers)